Table 3.

Diversity indices of the three nuclear genes analysed in the current study.

Gene	Agt			LFY			PHYA
	All	sieboldii	japonica	All	sieboldii	japonica	All	sieboldii	japonica
No. of polymorphic sites	15	5	1	35	5	11	5	2	0
No. of haplotypes	10	5	2	10	5	4	6	3	1
Haplotype diversity	0.734 ± 0.017	0.659 ± 0.018	0.063 ± 0.058	0.553 ± 0.036	0.421 ± 0.039	0.647 ± 0.046	0.615 ± 0.028	0.518 ±0.031	0
Nucleotide diversity	0.00119±0.00008	0.00074 ± 0.00004	0.00005 ± 0.00005	0.00447 ± 0.00056	0.00131 ± 0.00014	0.00701 ± 0.00055	0.00097 ± 0.00005	0.00073 ± 0.00005	0
Tajima’s D	−1.08277	0.07553	−1.14244	−1.48681*	−0.0594	1.89832*	0.26606	1.51046	-
Fu’s Fs	−1.221	0.659	−1.265	1.829	0.421	6.544*	0.133	2.153	-

*P > 0.05