Table 7.
Results of genome assembly computed using corrected reads of D1-P
| Method | # contigs | NGA50 | Largest | Total | Genome | # | # | # indels | # indels | Indel |
|---|---|---|---|---|---|---|---|---|---|---|
| (bp) | contigs (bp) | length (bp) | fraction (%) | misassemblies | mismatches | (<=5bp) | (>5bp) | length (bp) | ||
| Non-hybrid methods | ||||||||||
| FLAS | 2 | 3996362 | 4681650 | 4689583 | 99.998 | 4 | 4 | 162 | 0 | 167 |
| LoRMA | 14 | 696878 | 2501146 | 4663900 | 99.938 | 4 | 75 | 4181 | 6 | 4295 |
| Canu | 1 | 3976437 | 4670120 | 4670120 | 99.998 | 4 | 7 | 92 | 0 | 95 |
| Short-read-assembly-based methods | ||||||||||
| FMLRC | 9 | 3821409 | 4657352 | 4831908 | 99.998 | 8 | 1 | 4 | 0 | 5 |
| HALC | 25 | 2947777 | 4682714 | 5388722 | 99.983 | 8 | 541 | 35 | 8 | 257 |
| Jabba | 58 | 138874 | 398327 | 4623296 | 97.273 | 1 | 172 | 32 | 3 | 167 |
| LoRDEC | 2 | 3996441 | 4681757 | 4703690 | 99.998 | 4 | 66 | 18 | 2 | 55 |
| ECTools | 19 | 3548731 | 4657296 | 5154324 | 99.974 | 4 | 592 | 80 | 2 | 188 |
| Short-read-alignment-based methods | ||||||||||
| CoLoRMap | 86 | 1217587 | 1448649 | 5700143 | 99.998 | 4 | 42 | 3 | 7 | 478 |
| Nanocorr | 18 | 3095077 | 4646253 | 4931697 | 99.998 | 5 | 65 | 34 | 2 | 157 |
| proovread | 2 | 1686030 | 4626702 | 4666724 | 99.656 | 4 | 76 | 97 | 1 | 176 |