Table 1.

Topological parameters for the single‐plant network and the networks sampled from the SRA and diversity panel datasets. The “predicted positives” column indicates the amount of true‐positive plus false‐positive predictions made by each type of network at q ≤ 0.01

	# Nodes	# Edges	Network density	Average clustering coefficient	Unannotated gene fraction	Predicted positives
Single‐plant network	10,501	878,079	0.015927	0.481209	0.085135	291,237
SRA networks mean	10,256	878,079	0.017302	0.478519	0.091104	169,571
SRA networks SD	1,158	0	0.003674	0.022180	0.003826	25,649
P‐value single‐plant versus SRA networks	0.377	–	0.377	0.465	0.052	0.004
Diversity networks mean	14,193	878,079	0.013921	0.323074	0.102636	111,555
Diversity networks SD	5,177	0	0.010709	0.125699	0.008788	46,866
P‐value single‐plant versus diversity networks	0.436	–	0.574	0.039	0.001	0.001