TABLE 1.
Classification of full length 16S (bacteria and archaea; n = 16) and 18S (protozoa; n = 9) rRNA sequences included in the rumen specific reference standard.
| Sequence | Classification |
| 1 | Eubacterium_ruminantium_strain_GA195_NR_024661.1_Isolated_from_bovine_rumen_1508bp |
| 2 | Methanobrevibacter_millerae_strain_SM9_CP011266.1:785177-786613_Isolated_from_rumen_fluid_of_Ovis aries_1437bp |
| 3 | Methanobrevibacter_olleyae_strain_YLM1_CP014265.1:274144-275584 _Isolated from_rumen_content_of_Ovis_aries_1441bp |
| 4 | Peptostreptococcus_anaerobius_ATCC_27337_L04168.1_Isolated_from_bovine_rumen_1462bp |
| 5 | Pseudobutyrivibrio_ruminis_HUN009_NZ_JNLH01000001.1:24802-26343_Isolated_from_rumen_1542bp* |
| 6 | Propionibacterium_ruminibrarum_DSM106771T_Isolated_from_cow_rumen_fibrous_content_1430bp |
| 7 | Ruminococcus_albus_strain_7_CP002403.1:417348-418847_Isolated_from_cow rumen_1500bp |
| 8 | Butyrivibrio_fibrisolvens_ATCC_19171_U41172.1_Isolated_from_bovine_rumen_1477bp |
| 9 | Megasphaera_elsdenii_strain_DSM_20460_(= ATCC_25940)_NR_102980.1_Isolated_from_sheep_rumen_1552bp |
| 10 | Methanogenic_archaeon_strain_ISO4-H5 Methanomassiliicoccales_NZ_ CP014214.1:1550802-1552276_ Isolated from_rumen_content_of_Ovis_aries 1475bp |
| 11 | Streptococcus_bovis_strain_B315_AF396920.1_Isolated_from_cattle_rumen_1540bp |
| 12 | Lachnospira_multipara_DSM3073T_Isolated_from_bovine_rumen_1453bp |
| 13 | Fibrobacter_succinogenes_subsp._succinogenes_S85_NC_017448.1:1232471-1233969_Isolated_from_bovine_rumen_1499bp |
| 14 | Clostridium_aminophilum_strain_F_NR_118651.1_Isolated_from_bovine_rumen_1477bp |
| 15 | Selenomonas_ruminantium_strain_GA192_M62702.1_Isolated_from_bovine_rumen_1367bp |
| 16 | Prevotella_ruminicola_strain_23_NC_014033.1:223907-225439_Isolated_from_ rumen_1533bp |
| 17 | Entodinium_caudatum_U57765.1_18S_Isolated_from_sheep_rumen_18S_1639bp |
| 18 | Epidinium_ecaudatum_caudatum_AM158474.1_Isolated_from_sheep_rumen_18S_1637bp |
| 19 | Ostracodinium_gracile_AM158468.1_Isolated_from_cattle_rumen_18S_1639bp |
| 20 | Isotricha_prostoma_AF029762.1_Isolated_from_cow_rumen_18S_1641bp |
| 21 | Dasytricha_ruminantium_U57769.1_Isolated_from_sheep_rumen_18S_1638bp |
| 22 | Eudiplodinium_maggii_U57766.1_Isolation_from_rumen_18S_1637bp |
| 23 | Diploplastron_affine_AM158457.1_Isolated_from_cattle_rumen_18S_1627bp |
| 24 | Metadinium_medium_AM158464.1_Isolated_from_cattle_18S_1627bp |
| 25 | Polyplastron_multivesiculatum_AM158458.1_Isolated_from_sheep_rumen_18S_1629bp |
Sequence data and classifications were sourced from GenBank. *16S sequence of Pseudobutyrivibrio ruminis obtained from a draft genome.