TABLE 1.
General genome features of G. vaginalis
| Gardnerella vaginalis strain | ENA assembly no. | Genome status | Genome size (Mb) | GC content (%) | No. of CDS | No. of rRNA loci | No. of tRNA genes | Virulence gene(s) | Isolation source | BioProject accession no. |
|---|---|---|---|---|---|---|---|---|---|---|
| 5-1 | GCA_000176495.1 | Draft | 1.6728 | 42.0 | 1,273 | 1 | 45 | vly | Vagina | PRJNA40895 |
| 41V | GCA_000165635.2 | Draft | 1.6594 | 41.3 | 1,277 | 1 | 45 | vly | Vagina | PRJNA53893 |
| PSS_7772B | GCA_001546485.1 | Draft | 1.5967 | 42.9 | 1,169 | 1 | 44 | vly | Urine | PRJNA272100 |
| KA00225 | GCA_002896555.1 | Draft | 1.6700 | 40.8 | 1,187 | 2 | 45 | vly | Vagina | PRJNA338962 |
| 101 | GCA_000165615.2 | Draft | 1.5275 | 43.4 | 1,163 | 2 | 45 | vly | NAa | PRJNA53359 |
| CMW7778B | GCA_001563665.1 | Draft | 1.6026 | 38.0 | 1,150 | 1 | 44 | vly | Vagina | PRJNA272122 |
| N165 | GCA_003408785.1 | Draft | 1.7116 | 41.4 | 1,344 | 2 | 44 | vly, sld | Vaginal mucus | PRJNA310104 |
| 1400E | GCA_000263495.1 | Draft | 1.7163 | 41.2 | 1,331 | 3 | 44 | vly | Vagina | PRJNA42445 |
| 1500E | GCA_000263595.1 | Draft | 1.5482 | 43.0 | 1,157 | 3 | 45 | vly | Vagina | PRJNA42447 |
| 55152 | GCA_000263475.1 | Draft | 1.6432 | 41.3 | 1,244 | 1 | 45 | vly | Vagina | PRJNA42443 |
| GED7760B | GCA_001546455.1 | Draft | 1.4892 | 43.3 | 1,123 | 1 | 45 | sld | Vagina | PRJNA272108 |
| UGent 09.07 | GCA_003397665.1 | Draft | 1.7238 | 41.1 | 1,293 | 1 | 47 | vly | Vagina | PRJNA474758 |
| 00703C2mash | GCA_000263515.1 | Draft | 1.5467 | 42.3 | 1,185 | 2 | 45 | vly | Vagina | PRJNA42451 |
| 49145 | GCA_003034925.1 | Draft | 1.7014 | 41.2 | 1,325 | 1 | 45 | vly, sld | Vagina | PRJNA437230 |
| ATCC 49145 | GCA_001913835.1 | Draft | 1.7069 | 41.2 | 1,361 | 2 | 45 | vly, sld | Vagina | PRJNA342481 |
| GED7275B | GCA_001546445.1 | Draft | 1.5079 | 42.5 | 1,139 | 1 | 45 | vly | Vagina | PRJNA272096 |
| UMB0061 | GCA_002861165.1 | Draft | 1.7422 | 41.2 | 1,387 | 2 | 45 | vly, sld | Catheter | PRJNA316969 |
| 0288E | GCA_000263555.1 | Draft | 1.7088 | 41.2 | 1,338 | 1 | 45 | vly | Vagina | PRJNA42437 |
| 284V | GCA_000263435.1 | Draft | 1.6508 | 41.2 | 1,280 | 2 | 45 | vly | Vagina | PRJNA42431 |
| 00703Bmash | GCA_000263615.1 | Draft | 1.5661 | 42.3 | 1,227 | 1 | 45 | vly, sld | Vagina | PRJNA42449 |
| JCM 11026 | GCA_004336685.1 | Draft | 1.6571 | 41.3 | 1,225 | 1 | 45 | vly, sld | Vagina | PRJNA524873 |
| 6420B | GCA_000263575.1 | Draft | 1.4936 | 42.2 | 1,122 | 1 | 45 | vly | Vagina | PRJNA42441 |
| UMB0032B | GCA_002862005.1 | Draft | 1.7451 | 41.2 | 1,382 | 1 | 45 | vly, sld | Catheter | PRJNA316969 |
| 315-A | GCA_000214315.2 | Draft | 1.6533 | 41.4 | 1,298 | 1 | 45 | vly, sld | Vaginal | PRJNA52049 |
| NR010 | GCA_003408845.1 | Draft | 1.6227 | 45.5 | 1,181 | 3 | 45 | vly, sld | Vaginal mucus | PRJNA310104 |
| UMB0833 | GCA_002861885.1 | Draft | 1.6203 | 42.1 | 1,273 | 3 | 45 | sld | Catheter | PRJNA316969 |
| 6119V5 | GCA_000263655.1 | Draft | 1.4996 | 43.3 | 1,117 | 1 | 45 | vly | Vagina | PRJNA42455 |
| 3549624 | GCA_001049785.1 | Draft | 1.7323 | 41.4 | 1,298 | 2 | 45 | vly, sld | Vagina | PRJNA288563 |
| 00703Dmash | GCA_000263635.1 | Draft | 1.4908 | 43.4 | 1,121 | 1 | 45 | vly | Vagina | PRJNA42453 |
| 14018c | GCA_004336715.1 | Draft | 1.6578 | 41.3 | 1,232 | 1 | 45 | vly, sld | NA | PRJNA524879 |
| UMB0032A | GCA_002862015.1 | Draft | 1.7455 | 41.2 | 1,383 | 2 | 45 | vly, sld | Catheter | PRJNA316969 |
| UMB0770 | GCA_002861945.1 | Draft | 1.6960 | 41.2 | 1,323 | 1 | 45 | vly, sld | Catheter | PRJNA316969 |
| UMB0775 | GCA_002861925.1 | Draft | 1.7436 | 41.2 | 1,397 | 2 | 45 | vly, sld | Catheter | PRJNA316969 |
| GS 9838-1 | GCA_003397705.1 | Draft | 1.6221 | 41.9 | 1,231 | 2 | 45 | vly | Vagina | PRJNA474758 |
| UMB1686 | GCA_002884775.1 | Draft | 1.5106 | 43.3 | 1,124 | 2 | 45 | vly, sld | Catheter | PRJNA316969 |
| DNF01149 | GCA_002894105.1 | Draft | 1.7247 | 41.2 | 1,362 | 3 | 45 | vly, sld | Vagina | PRJNA338971 |
| N101 | GCA_003369895.1 | Draft | 1.5430 | 42.4 | 1,205 | 1 | 45 | vly, sld | Vaginal swab | PRJNA265097 |
| UMB0233 | GCA_002862045.1 | Draft | 1.6424 | 41.2 | 1,292 | 1 | 45 | vly, sld | Catheter | PRJNA316969 |
| 14019_MetR | GCA_001278345.1 | Draft | 1.6611 | 41.3 | 1,317 | 1 | 45 | vly, sld | NA | PRJNA294071 |
| W11 | GCA_003369875.1 | Draft | 1.5667 | 42.3 | 1,213 | 1 | 45 | sld | Vaginal swab | PRJNA265103 |
| N95 | GCA_003369965.1 | Draft | 1.5225 | 42.4 | 1,183 | 2 | 45 | vly, sld | Vaginal swab | PRJNA265092 |
| UMB0682 | GCA_002862065.1 | Draft | 1.6013 | 42.1 | 1,234 | 1 | 45 | vly | Catheter | PRJNA316969 |
| N153 | GCA_003369935.1 | Draft | 1.5418 | 42.4 | 1,167 | 1 | 45 | vly, sld | Vaginal swab | PRJNA265102 |
| N72 | GCA_003408815.1 | Draft | 1.6429 | 41.9 | 1,249 | 1 | 45 | vly | Vaginal mucus | PRJNA310104 |
| N160 | GCA_003408775.1 | Draft | 1.5097 | 43.3 | 1,119 | 3 | 43 | vly, sld | Vaginal mucus | PRJNA310104 |
| UGent 18.01 | GCA_003397585.1 | Draft | 1.5143 | 42.5 | 1,144 | 1 | 45 | sld | Vagina | PRJNA474758 |
| UMB0768 | GCA_002884835.1 | Draft | 1.6748 | 41.3 | 1,319 | 2 | 45 | vly, sld | Catheter | PRJNA316969 |
| UMB1642 | GCA_002884795.1 | Draft | 1.6288 | 41.8 | 1,233 | 2 | 45 | vly | Catheter | PRJNA316969 |
| UMB0264 | GCA_002884875.1 | Draft | 1.5151 | 42.3 | 1,155 | 2 | 45 | vly | Catheter | PRJNA316969 |
| UMB0913 | GCA_002861145.1 | Draft | 1.5136 | 42.1 | 1,140 | 1 | 45 | vly | Catheter | PRJNA316969 |
| UMB0170 | GCA_002884855.1 | Draft | 1.5147 | 42.3 | 1,153 | 2 | 45 | vly | Catheter | PRJNA316969 |
| UMB0912 | GCA_002861125.1 | Draft | 1.5138 | 42.1 | 1,140 | 1 | 45 | vly | Catheter | PRJNA316969 |
| UMB0830 | GCA_002861905.1 | Draft | 1.5592 | 42.3 | 1,224 | 1 | 45 | vly, sld | Catheter | PRJNA316969 |
| 75712 | GCA_000263535.1 | Draft | 1.6730 | 41.3 | 1,302 | 2 | 45 | vly | Vagina | PRJNA42435 |
| UMB0386 | GCA_002861965.1 | Draft | 1.6757 | 41.2 | 1,323 | 2 | 45 | vly, sld | Catheter | PRJNA316969 |
| UGent 25.49 | GCA_003397605.1 | Draft | 1.6586 | 41.2 | 1,246 | 2 | 45 | vly, sld | Vagina | PRJNA474758 |
| GS 10234 | GCA_003397745.1 | Draft | 1.5890 | 41.9 | 1,181 | 2 | 45 | vly | Vagina | PRJNA474758 |
| UGent 09.48 | GCA_003397635.1 | Draft | 1.4709 | 42.2 | 1,095 | 1 | 45 | vly | Vagina | PRJNA474758 |
| UGent 21.28 | GCA_003397615.1 | Draft | 1.5479 | 42.5 | 1,189 | 1 | 45 | sld | Vagina | PRJNA474758 |
| UMB0298 | GCA_002861975.1 | Draft | 1.6760 | 41.2 | 1,319 | 2 | 45 | vly, sld | Catheter | PRJNA316969 |
| ATCC 14018 | GCA_003397685.1 | Draft | 1.6620 | 41.3 | 1,248 | 1 | 45 | vly, sld | Vagina | PRJNA474758 |
| FDAARGOS_296 | GCA_002206225.2 | Draft | 1.7710 | 41.3 | 1,375 | 2 | 45 | vly, sld | NA | PRJNA231221 |
| N144 | GCA_003408835.1 | Draft | 1.5824 | 42.3 | 1,217 | 1 | 45 | vly, sld | Vaginal mucus | PRJNA310104 |
| GH015 | GCA_003408745.1 | Draft | 1.5756 | 41.0 | 1,173 | 1 | 43 | vly, sld | Vaginal mucus | PRJNA310104 |
| JCM 11026 | GCA_001042655.1 | Complete | 1.6674 | 41.3 | 1,244 | 2 | 45 | vly, sld | Vagina | PRJDB63 |
| NCTC10287 | GCA_900637625.1 | Complete | 1.6674 | 41.4 | 1,252 | 2 | 45 | vly, sld | Vagina | PRJEB6403 |
| GV37 | GCA_001953155.1 | Complete | 1.7467 | 41.8 | 1,359 | 2 | 45 | vly | Blood culture | PRJNA360037 |
| HMP9231 | GCA_000213955.1 | Complete | 1.7265 | 41.2 | 1,354 | 2 | 45 | vly | Endometrium | PRJNA51067 |
| FDAARGOS_568 | GCA_003812765.1 | Complete | 1.7166 | 41.3 | 1,368 | 2 | 45 | vly, sld | NA | PRJNA231221 |
| ATCC 14019 | GCA_000159155.2 | Complete | 1.6674 | 41.4 | 1,209 | 2 | 45 | vly, sld | Vaginal | PRJNA31473 |
| 409-05 | GCA_000025205.1 | Complete | 1.6176 | 42.0 | 1,237 | 2 | 45 | vly | Vaginal | PRJNA31001 |
| UGent 06.41 | GCA_003293675.1 | Complete | 1.5635 | 42.1 | 1,162 | 2 | 45 | vly | Vagina | PRJNA474758 |
a
NA, not available.