Chemicals, peptides, and recombinant proteins |
|
Papain vial source |
Worthington |
Cat#PAP2 |
DNase vial source |
Worthington |
Cat#D2 |
Inhibitor vial source |
Worthington |
Cat#OI-BSA |
EBSS |
Thermo Fisher Scientific |
Cat#24010043 |
DMEM/F12 |
Thermo Fisher Scientific |
Cat#21041025 |
Heat-inactivated fetal bovine serum (FBS) |
Thermo Fisher Scientific |
Cat#10082147 |
Heat-inactivated horse serum (HS) |
Thermo Fisher Scientific |
Cat#26050088 |
Triton X 100 |
Sigma-Aldrich |
Cat#T878 |
RNase inhibitor |
Takara |
Cat#2313A |
RNase away |
Thermo Fisher Scientific |
Cat#10328011 |
RNase-free water |
Thermo Fisher Scientific |
Cat#10977035 |
|
Critical commercial assays |
|
FACS Blue LacZ beta galactosidase detection kit |
Abcam |
Cat#ab189815 |
|
Experimental models: organisms/strains |
|
Mouse: MADM-7-GT
|
The Jackson Laboratory |
RRID:IMSR_JAX:021457 |
Mouse: MADM-7-TG
|
The Jackson Laboratory |
RRID:IMSR_JAX:021458 |
Mouse: Emx1-Cre |
The Jackson Laboratory |
RRID:IMSR_JAX:005628 |
Mouse: XGFAP-LacZ |
The Jackson Laboratory |
RRID: IMSR JAX: 003487 |
|
Software and algorithms |
|
FACS Diva |
BD Biosciences |
https://www.bdbiosciences.com/en-us/instruments/research-instruments/research-software/flow-cytometry-acquisition/facsdiva-software |
R statistical environment |
|
https://www.r-project.org/ |
DESeq2 |
Love et al., 2014 |
http://www.bioconductor.org/ |
Seurat |
Butler et al., 2018 |
http://www.bioconductor.org/ |
|
Other |
|
FACS Aria III |
BD Biosciences |
N/A |
AluminaSeal |
Merck |
Cat#Z740251-100EA |
Hard-Shell PCR Plates (96-well) |
Bio Rad |
Cat#HSP9631 |
PCR tubes and caps, RNase-free, 0.2 mL (8-strip format) |
Thermo Fisher Scientific |
Cat#AM12230 |
Falcon 5 mL polystyrene round-bottom tube with cell strainer cap (Falcon 352235) (40 μm cell strainer) |
Fisher Scientific |
Cat#10585801 |
Microfuge tubes 1.5 mL |
Thermo Fisher Scientific |
Cat#AM12450 |
TPP TubeSpin bioreactor tubes |
Merck |
Cat#Z761028-180EA |