Table 3. Antimicrobial resistance genes.
| Sample_name | Antibiotics (Identity%; Query/Template length) | |||||
|---|---|---|---|---|---|---|
| Aminoglycoside | Macrolide | Quinolones | Beta-Lactam | Phenicol | Trimethoprim | |
| RSCM_EC_0203 | mdf(A) (99.11; 1233/1233) | |||||
| RSCM_EC_0709 | aac(3)-IId (99.88; 861/861) | mdf(A) (98.46; 1233/1233) | qnrS1 (100; 657/657) | blaCTX-M-55 (100; 876/876) | ||
| RSCM_EC_0507 |
aac(3)-IId (99.88; 861/861) aadA2 (100; 792/792) |
mdf(A) (99.92; 1233/1233) mph(A) (100; 906/906) |
qepA4 (100; 1536/1536) |
blaCTX-M-15 (100; 876/876) blaTEM-1B (100; 861/861) |
catA1 (99.85; 660/660) | dfrA12 (100; 498/498) |
| RSCM_EC_1316 |
mdf(A) (97.89; 1233/1233) |
blaCTX-M-15 (100; 876/876) |
||||
| RSCM_EC_1114 |
mdf(A) (97.89; 1233/1233) |
|||||
| RSCM_EC_0102 |
Aph(3”)-Ib (100; 804/804) aph(6)-Id (100; 837/837) |
mdf(A) (97.89; 1233/1233) |
blaTEM-1B (100; 837/837) |
dfrA7 (100; 474/474) |
||
| RSCM_EC_0406 |
aac(3)-IId (99.88; 861/861) Aac(6”)-Iai (100; 567/567) |
mdf(A) (97.81; 1233/1233) mph(A) (100; 906/906) |
qnrB4 (100; 645/645) |
blaDHA-1 (100; 1140/1140) blaOXA-10 (100; 637/801) blaSHV-120, (100; 861/861) blaTEM-1B (100; 861/861) |
dfrA16 (100; 474/474) dfrA17 (100; 474/474) |
|
| RSCM_EC_0911 |
aac(3)-IIa (99.77; 861/861) aac(6')-Ib-cr (100; 600/600) aadA5 (100; 789/789) |
mdf(A) (97.81; 1233/1233) mph(A) (99.58; 720/921) |
aac(6')-Ib-cr (100; 600/600) |
blaCTX-M-15 (100; 876/876) blaOXA-1 (100; 831/831) |
catB3 (100; 442/633) |
dfrA17 (100; 474/474) |
| RSCM_EC_2442 |
mdf(A) (97.81; 1233/1233) |
blaCTX-M-27 (100; 876/876) |
||||
| RSCM_EC_2137 |
aac(6')-Ib-cr (100; 600/600) aac(3)-IIa (99.77; 861/861) |
mdf(A) (97.81; 1233/1233) |
aac(6')-Ib-cr (100; 600/600) |
blaCTX-M-15 (100; 876/876) blaOXA-1 (100; 831/831) |
catB3 (100; 442/633) |
|
| RSCM_EC_1833 |
aac(3)-IId (99.88; 861/861) aac(6')-Ib-cr (100; 600/600) aadA2 (100; 565/792) |
mdf(A) (97.81; 1233/1233) mph(A) (99.58; 720/921) ere(B) (100; 1189/1260) |
aac(6')-Ib-cr (100; 600/600) |
blaCARB-2 (100; 867/867) blaCTX-M-15 (100; 876/876) blaTEM-1B (100; 861/861) blaOXA-1 (100; 831/831) |
catA1 (99.85; 660/660) catA2 (96.11; 642/642) catB3 (100; 442/633) |
dfrA12 (100; 498/498) dfrA14 (100; 474/474) |
| RSCM_EC_0608 |
mdf(A) (98.46; 1233/1233) |
|||||
| RSCM_EC_2240 |
aadA1 (99.87; 792/792) |
mdf(A) (98.05; 1233/1233) mph(A) (100; 906/906) |
qnrB4 (100; 645/645) |
blaDHA-1 (100; 1140/1140) |
||
| RSCM_EC_2036 |
aph(6)-Id (100; 837/837) aph(3'')-Ib (100; 804/804) |
mdf(A) (97.97; 1233/1233) |
qepA1 (100; 1536/1536) |
blaCTX-M-27 (100; 876/876) |
floR (98.19; 1214/1215) |
|
| RSCM_EC_1526 |
aph(6)-Id (100; 698/831) aadA5 (100; 789/789) aph(3'')-Ib (100; 804/804) |
mdf(A) (97.97; 1233/1233) mph(A) (100; 906/906) |
qepA1 (99.61; 1542/1536) |
blaCTX-M-27 (100; 876/876) |
floR (98.19; 1214/1215) |
dfrA17 (100; 474/474) |
| RSCM_EC_1013 |
aac(3)-IIa (99.77; 861/861) aph(3'')-Ib (100; 804/804) aph(6)-Id (100; 837/837) aadA5 (100; 789/789) |
mdf(A) (97.97; 1233/1233) mph(A) (100; 906/906) erm(B) (99.73; 738/738) |
blaCTX-M-15 (100; 876/876) |
floR (98.19; 1214/1215) |
dfrA17 (100; 474/474) |
|
| RSCM_EC_0305 |
aph(6)-Id (100; 831/831) Aph(3”)-Ib (100; 804/804) aadA5 (100; 789/789) |
mdf(A) (98.13; 1233/1233) mph(A) (100; 906/906) |
blaCTX-M-27 (100; 876/876) |
dfrA17 (100; 474/474) |
||
| RSCM_EC_1628 |
mdf(A) (98.13; 1233/1233) |
blaCTX-M-27 (100; 876/876) |
||||
| RSCM_EC_1418 |
aadA1 (100; 789/789) aph(3'')-Ib (100; 803/804) aph(6)-Id (100; 837/837) |
mdf(A) (98.13; 1233/1233) |
blaTEM-1B (100; 861/861) |
catA1 (99.55; 660/660) |
dfrA1 (100; 474/474) |
|
| RSCM_EC_2341 |
mdf(A) (97.57; 1233/1233) |
qnrB4 (100; 645/645) |
blaTEM-1B (100; 861/861) blaDHA-1 (100; 1140/1140) |
dfrA17 (100; 474/474) |
||
| RSCM_EC_1732 |
aadA17 (98.86; 792/792) aph(3'')-Ib (100; 804/804) aac(3)-IId (99.88; 861/861) aph(6)-Id (100; 837/837) |
mdf(A) (97.57; 1233/1233) mph(A) (100; 906/906) Inu(F) (100; 822/822) |
qnrS1 (100; 657/657) |
blaCTX-M-55 (100; 876/876) blaTEM-1B (100; 861/861) |
dfrA14 (100; 474/474) |
|
| RSCM_EC_1935 |
aph(6)-Id (100; 837/837) aph(3'')-Ib (100; 529/804) |
mdf(A) (97.57; 1233/1233) |
blaTEM-1B (100; 861/861) |
dfrA14 (100; 474/474) |
||