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. 2020 Sep 21;6(2):veaa071. doi: 10.1093/ve/veaa071

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© The Author(s) 2020. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 3. — Phylogenetic placement of EGV-encoded Rep proteins. Maximum-likelihood phylogenetic tree constructed using EGV Rep protein sequences retrieved from plant genome sequences (Gen; thirty-six sequences) and transcriptome datasets (Tr; 5 sequences) and from representatives of the geminivirus genus (fifty-five sequences). Distant homologues (four sequences from genomoviruses and phytoplasma) were used as outgroups. Sequences are color-coded according to virus genera, EGV, genomovirus, or phytoplasma origin. Bootstrap values are shown on the nodes of the phylogenetic tree. A scale of substitution rates is provided at the bottom of the tree.