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. 2020 Sep 21;6(2):veaa071. doi: 10.1093/ve/veaa071

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© The Author(s) 2020. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 4. — (A) Phylogenetic tree of the rep catalytic domain of the sequences discovered within the genomes and transcriptomes of plants in the Ericales order along with representative geminivirus sequences focusing on (B) integration event numbers 3, 4, and 5, (C) integration event number 6, and (D) integration event number 8. All trees are constructed at the same scale according to the scale bar of panel A. Phylogenetic trees branches are coloured according to the plant within which the rep sequence was discovered (see colour key on bottom right). Branches from Camellia oleifera, Camellia reticulata, Camellia sasanqua, and Camellia taliensis have been pooled under ‘other Camellia species’. Geminivirus reference sequences are coloured in black. Integration numbers are indicated with circled numbers (see Supplementary Table S10). (E) The left panel shows a cladogram of the Ericales species constructed on the basis of previous work (Rose et al. 2018). Black numbers indicate divergence time estimates (collected from (Li et al. 2013; Rose et al. 2018)) and red numbers indicate integration events. The right panel shows the number of identified viral-like Rep genomic loci and related protein information in Ericales.