Table 3. The amino acid variations of four SARS-CoV-2 virus samples from Yogyakarta and Central Java (positions referred to the reference sequence: NC_045512.2).
| No | Virus ID | NSP3-ORF1ab | NSP5-ORF1ab | NSP12-ORF1ab | NSP13-ORF1ab | NSP14-ORF1ab | Spike-S | NS3-ORF3a | Matrix-M | NS7a-ORF7a | NP-N | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 106 | 270 | 679 | 822 | 49 | 151 | 205 | 284 | 323 | 418 | 656 | 576 | 235 | 280 | 614 | 54 | 57 | 99 | 71 | 115 | 73 | 154 | 160 | ||
| 1 | hCoV-19/Wuhan/Hu-1/2019 (NC_045512.2) | F | D | P | P | M | N | L | D | P | D | A | M | Y | L | D | A | Q | A | Y | E | H | N | Q |
| 2 | hCoV19/Indonesia/YO-UGM-781481/2020 (EPI_ISL_516829) | F | D | S | P | M | N | L | D | L | D | S | I | Y | L | G | V | H | S | Y | E | H | N | R |
| 3 | hCoV19/Indonesia/YO-UGM-202449/2020 (EPI_ISL_516800) | F | D | P | L | M | N | L | D | L | D | A | M | Y | L | G | A | H | A | Y | E | H | N | Q |
| 4 | hCov19/Indonesia/JT-UGM-202538/2020 (EPI_ISL_525492) | F | D | P | L | M | N | L | D | L | D | A | M | Y | L | G | A | H | A | Y | E | Y | N | Q |
| 5 | hCoV19/Indonesia/YO-UGM-200927/2020 (EPI_ISL_516806) | F | D | P | P | I | N | L | D | P | D | A | M | Y | L | D | A | Q | A | Y | E | H | N | Q |
Notes:
Name of SARS-CoV-2 proteins (bold) are followed by related genes (italic) and amino acid variations are colour-shaded.
Amino acid variations are shown starting from translated region of each protein.