Table 1.
Summary of individual information, and VP7 (G) and VP4 (P) genotypes of 99 bovine rotavirus A strains collected in Japan from 2017 to 2020.
| Strain | Collection Area | Collection Data | Age | Cattle Type | VP7 | VP4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|
| Open Reading Frame (Length) | G Genotype a | Accession Number | Open Reading Frame (Length) | P Genotype b | Accession Number | |||||
| HKD1 | Hokkaido | 2017.4 | 5 | Holstein | 981 | G6 | LC590915 | 2136 | P[5] | LC590916 |
| HKD2 | Hokkaido | 2017.4 | 10 | Holstein | 981 | G6 | LC590917 | 2226 | P[11] | LC590918 |
| HKD3 | Hokkaido | 2017.3 | 8 | Holstein | 981 | G6 | LC590919 | 2277 | P[11] | LC590920 |
| HKD5 | Hokkaido | 2017.3 | 7 | Holstein | 981 | G6 | LC590921 | 2283 | P[5] | LC590922 |
| HKD6 | Hokkaido | 2017.3 | 7 | Holstein | 981 | G6 | LC590923 | 2202 | P[11] | LC590924 |
| HKD7 | Hokkaido | 2017.3 | 9 | Holstein | 981 | G6 | LC590925 | 2199 | P[11] | LC590926 |
| HKD8 | Hokkaido | 2017.3 | 8 | Holstein | 981 | G6 | LC590927 | N.D. | P[x] | - |
| HKD9 | Hokkaido | 2017.3 | 7 | Holstein | 981 | G6 | LC590928 | 2196 | P[11] | LC590929 |
| HKD10 | Hokkaido | 2017.5 | 4 | Holstein | 981 | G6 | LC590930 | 2286 | P[5] | LC590931 |
| HKD11 | Hokkaido | 2017.2 | 6 | Holstein | 981 | G6 | LC590932 | N.D. | P[x] | - |
| HKD13 | Hokkaido | 2018.7 | <7 | Holstein | 981 | G6 | LC590933 | 2274 | P[11] | LC590934 |
| HKD14 | Hokkaido | 2018.8 | <7 | Holstein | 981 | G6 | LC590935 | 2274 | P[11] | LC590936 |
| HKD15 | Hokkaido | 2018.8 | <7 | Holstein | 981 | G6 | LC590937 | 2274 | P[11] | LC590938 |
| HKD16 | Hokkaido | 2017.12 | 10 | Holstein | 981 | G6 | LC590939 | 2268 | P[5] | LC590940 |
| HKD17 | Hokkaido | 2017.12 | 12 | Holstein | 981 | G6 | LC590941 | 2235 | P[11] | LC590942 |
| HKD18 | Hokkaido | 2018.3 | <7 | Holstein | 981 | G6 | LC590943 | 2274 | P[5] | LC590944 |
| HKD19 | Hokkaido | 2018.3 | <7 | Holstein | 981 | G6 | LC590945 | 2277 | P[5] | LC590946 |
| HKD20 | Hokkaido | 2018.3 | <7 | Holstein | 981 | G6 | LC590947 | 2277 | P[5] | LC590948 |
| HKD21 | Hokkaido | 2018.3 | <7 | Holstein | 981 | G6 | LC590949 | 2283 | P[5] | LC590950 |
| HKD22 | Hokkaido | 2018.3 | 10 | Holstein | 981 | G6 | LC590951 | 2274 | P[11] | LC590952 |
| HKD23 | Hokkaido | 2018.3 | 8 | Holstein | 981 | G6 | LC590953 | 2280 | P[5] | LC590954 |
| HKD24 | Hokkaido | 2018.3 | <7 | Japanese beef | 981 | G6 | LC590955 | 2265 | P[5] | LC590956 |
| HKD25 | Hokkaido | 2018.3 | <7 | Japanese beef | 981 | G6 | LC590957 | 2271 | P[5] | LC590958 |
| HKD27 | Hokkaido | 2018.3 | <7 | Japanese beef | 981 | G6 | LC590959 | 2274 | P[5] | LC590960 |
| HKD28 | Hokkaido | 2018.4 | 9 | Holstein | 981 | G6 | LC590961 | 2277 | P[5] | LC590962 |
| HKD29 | Hokkaido | 2018.4 | 9 | Japanese beef | 981 | G6 | LC590963 | 2277 | P[5] | LC590964 |
| SZO30 | Shizuoka | 2017.12 | 14 | F1 hybrid | 981 | G10 | LC590965 | 2265 | P[11] | LC590966 |
| OKY31 | Okayama | 2017.10 | 9 | F1 hybrid | 981 | G10 | LC590967 | 2268 | P[11] | LC590968 |
| OKY32 | Okayama | 2017.11 | 91 | Holstein | 981 | G10 | LC590969 | 2268 | P[11] | LC590970 |
| OKY33 | Okayama | 2018.1 | 62 | F1 hybrid | 981 | G10 | LC590971 | 2274 | P[11] | LC590972 |
| SMN34 | Shimane | 2017.11 | 10 | F1 hybrid | 981 | G6 | LC590973 | 2277 | P[5] | LC590974 |
| SMN35 | Shimane | 2018.1 | 13 | Japanese beef | 981 | G6 | LC590975 | 2286 | P[5] | LC590976 |
| SMN37 | Shimane | 2018.3 | 7 | Japanese beef | 981 | G6 | LC590977 | 2262 | P[5] | LC590978 |
| KGW39 | Kagawa | 2017.6 | 6 | F1 hybrid | 981 | G10 | LC590979 | 2268 | P[11] | LC590980 |
| KGW40 | Kagawa | 2017.7 | 9 | F1 hybrid | 981 | G10 | LC590981 | N.D. | P[x] | - |
| OKY41 | Okayama | 2018.4 | 5 | F1 hybrid | 981 | G6 | LC590982 | 2271 | P[5] | LC590983 |
| OKY42 | Okayama | 2019.1 | 14 | Holstein | 981 | G6 | LC590984 | 2277 | P[11] | LC590985 |
| OKY44 | Okayama | 2019.2 | 15 | F1 hybrid | 981 | G6 | LC590986 | 2277 | P[11] | LC590987 |
| OKY45 | Okayama | 2019.1 | 10 | Holstein | 981 | G6 | LC590988 | 2277 | P[11] | LC590989 |
| OKY46 | Okayama | 2019.1 | 16 | Holstein | 981 | G6 | LC590990 | 2277 | P[11] | LC590991 |
| OKY47 | Okayama | 2019.1 | 20 | F1 hybrid | 981 | G10 | LC590992 | 2277 | P[11] | LC590993 |
| OKY48 | Okayama | 2019.2 | 39 | F1 hybrid | 981 | G6 | LC590994 | 2277 | P[11] | LC590995 |
| OKY49 | Okayama | 2019.2 | 13 | Holstein | 981 | G6 | LC590996 | 2277 | P[11] | LC590997 |
| HKD50 | Hokkaido | 2019.1 | 17 | Holstein | 981 | G6 | LC590998 | 2271 | P[11] | LC590999 |
| HKD51 | Hokkaido | 2019.1 | 15 | Holstein | 981 | G6 | LC591000 | 2271 | P[11] | LC591001 |
| HKD52 | Hokkaido | 2019.6 | 17 | Holstein | 975 | G10 | LC591002 | 2271 | P[11] | LC591003 |
| HKD53 | Hokkaido | 2019.2 | 9-11 | Holstein | 981 | G6 | LC591004 | 2271 | P[11] | LC591005 |
| HKD54 | Hokkaido | 2019.2 | 9-11 | Holstein | 981 | G6 | LC591006 | 2271 | P[11] | LC591007 |
| HKD56 | Hokkaido | 2019.3 | 8 | Japanese beef | 981 | G6 | LC591008 | 2289 | P[5] | LC591009 |
| HKD57 | Hokkaido | 2019.3 | 24 | Japanese beef | 969 | G6 | LC591010 | 2289 | P[5] | LC591011 |
| HKD58 | Hokkaido | 2019.3 | 14 | Holstein | 981 | G6 | LC591012 | N.D. | P[x] | - |
| HKD59 | Hokkaido | 2019.3 | 10 | Holstein | 981 | G6 | LC591013 | 2271 | P[11] | LC591014 |
| HKD60 | Hokkaido | 2019.4 | 8 | Holstein | 981 | G6 | LC591015 | 2289 | P[5] | LC591016 |
| HKD61 | Hokkaido | 2019.4 | 8 | Holstein | 981 | G6 | LC591017 | 2289 | P[5] | LC591018 |
| HKD62 | Hokkaido | 2019.4 | 7 | Holstein | 981 | G6 | LC591019 | 2289 | P[5] | LC591020 |
| HKD63 | Hokkaido | 2019.5 | <7 | Holstein | 981 | G10 | LC591021 | 2271 | P[11] | LC591022 |
| HKD64 | Hokkaido | 2019.5 | <7 | Holstein | 981 | G10 | LC591023 | N.D. | P[x] | - |
| HKD65 | Hokkaido | 2019.5 | <7 | Holstein | 981 | G6 | LC591024 | 2289 | P[5] | LC591025 |
| HKD66 | Hokkaido | 2019.7 | <7 | Japanese beef | 981 | G6 | LC591026 | 2289 | P[5] | LC591027 |
| HKD67 | Hokkaido | 2019.7 | <7 | Japanese beef | 981 | G6 | LC591028 | 2289 | P[5] | LC591029 |
| HKD68 | Hokkaido | 2019.7 | <7 | Japanese beef | 981 | G6 | LC591030 | 2289 | P[5] | LC591031 |
| FKS69 | Fukushima | 2019.8 | 10 | Holstein | 981 | G6 | LC591032 | 2289 | P[5] | LC591033 |
| FKS70 | Fukushima | 2019.8 | 10 | Holstein | 981 | G6 | LC591034 | 2289 | P[5] | LC591035 |
| FKS71 | Fukushima | 2019.8 | 10 | Holstein | 981 | G6 | LC591036 | 2289 | P[5] | LC591037 |
| FKS72 | Fukushima | 2019.8 | 8 | F1 hybrid | 981 | G6 | LC591038 | 2289 | P[5] | LC591039 |
| FKS73 | Fukushima | 2019.8 | 10 | Japanese beef | 981 | G6 | LC591040 | 2289 | P[5] | LC591041 |
| OKY75 | Okayama | 2019.7 | 13 | F1 hybrid | 981 | G10 | LC591042 | 2271 | P[11] | LC591043 |
| OKY76 | Okayama | 2019.8 | 10 | Holstein | 975 | G10 | LC591044 | 2271 | P[11] | LC591045 |
| OKY77 | Okayama | 2019.8 | 13 | Holstein | 975 | G10 | LC591046 | 2271 | P[11] | LC591047 |
| OKY78 | Okayama | 2019.9 | 9 | Holstein | 981 | G10 | LC591048 | 2271 | P[11] | LC591049 |
| HKD79 | Hokkaido | 2019.10 | 5 | Holstein | 981 | G6 | LC591050 | 2289 | P[5] | LC591051 |
| HKD80 | Hokkaido | 2019.10 | 5 | Holstein | 981 | G6 | LC591052 | 2289 | P[5] | LC591053 |
| HKD81 | Hokkaido | 2019.10 | 5 | Holstein | 981 | G6 | LC591054 | 2289 | P[5] | LC591055 |
| HKD82 | Hokkaido | 2019.10 | 5 | Holstein | 981 | G6 | LC591056 | 2289 | P[5] | LC591057 |
| HKD83 | Hokkaido | 2019.11 | 13 | Japanese beef | 981 | G6 | LC591058 | 2283 | P[5] | LC591059 |
| HKD84 | Hokkaido | 2020.1 | 7 | Japanese beef | 981 | G6 | LC591060 | 2280 | P[5] | LC591061 |
| HKD85 | Hokkaido | 2019.12 | 5 | Japanese beef | 981 | G6 | LC591062 | 2247 | P[5] | LC591063 |
| HKD86 | Hokkaido | 2020.1 | 7 | Japanese beef | 981 | G6 | LC591064 | 2289 | P[5] | LC591065 |
| HKD87 | Hokkaido | 2020.2 | 12 | Japanese beef | 981 | G6 | LC591066 | 2289 | P[5] | LC591067 |
| HKD88 | Hokkaido | 2020.2 | 13 | Holstein | 981 | G10 | LC591068 | 2268 | P[11] | LC591069 |
| HKD89 | Hokkaido | 2020.2 | 4 | Holstein | 981 | G6 | LC591070 | 2289 | P[5] | LC591071 |
| HKD91 | Hokkaido | 2020.5 | 14 | F1 hybrid | 981 | G6 | LC591072 | 2292 | P[5] | LC591073 |
| FKS92 | Fukushima | 2020.2 | 9 | F1 hybrid | 957 | G6 | LC591074 | 2292 | P[5] | LC591075 |
| FKS93 | Fukushima | 2020.2 | 12 | Holstein | N.D. | Gx | - | 2235 | P[11] | LC591076 |
| FKS94 | Fukushima | 2020.3 | 10 | F1 hybrid | 981 | G10 | LC591077 | N.D. | P[x] | - |
| FKS95 | Fukushima | 2020.3 | 8 | F1 hybrid | 954 | G6 | LC591078 | 2136 | P[5] | LC591079 |
| MYZ96 | Miyazaki | 2020.2 | 8 | Japanese beef | 981 | G6 | LC591080 | 2220 | P[5] | LC591081 |
| MYZ97 | Miyazaki | 2020.2 | 10 | Japanese beef | 981 | G6 | LC591082 | 2292 | P[5] | LC591083 |
| KGS98 | Kagoshima | 2020.3 | 5 | Japanese beef | 981 | G6 | LC591084 | 2280 | P[5] | LC591085 |
| OKY100 | Okayama | 2019.12 | 7 | Japanese beef | 981 | G6 | LC591086 | 2286 | P[5] | LC591087 |
| OKY101 | Okayama | 2020.2 | 9 | Holstein | N.D. | Gx | - | 2200 | P[11] | LC591088 |
| OKY102 | Okayama | 2020.4 | 21 | Japanese beef | 981 | G6 | LC591089 | 2154 | P[5] | LC591090 |
| OKY103 | Okayama | 2020.4 | 6 | Japanese beef | 981 | G6 | LC591091 | 2292 | P[5] | LC591092 |
| OKY104 | Okayama | 2020.4 | 5 | Japanese beef | 981 | G6 | LC591093 | 2286 | P[5] | LC591094 |
| OKY105 | Okayama | 2020.4 | 14 | Holstein | 981 | G6 | LC591095 | N.D. | P[x] | - |
| OKY106 | Okayama | 2020.4 | 5 | Japanese beef | 981 | G6 | LC591096 | 2292 | P[5] | LC591097 |
| OKY107 | Okayama | 2020.4 | 6 | Japanese beef | 981 | G6 | LC591098 | 2286 | P[5] | LC591099 |
| OKY108 | Okayama | 2020.5 | 10 | Japanese beef | 981 | G6 | LC591100 | 2286 | P[5] | LC591101 |
| OKY109 | Okayama | 2020.5 | 6 | Holstein | 921 | G6 | LC591102 | N.D. | P[x] | - |
a G6, G10, and Gx are shown in light-blue, green, and blue, respectively; b P[5], P[11], and P[x] are shown in orange, pink, and red, respectively.