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Genotype calling results from the alignments to chromosome 28 of ARS-UCD 1.2 and to the mutant chromosome at the 10,000 heterozygous sites. (A) The percentage of SNPs correctly identified (heterozygous). (B) The percentage of false homozygous alternate calls. (C) The percentage of false homozygous reference calls. (D) The percentage of SNP loci with coverage less than 2×.
