| API-MALDI/TOF | atmospheric pressure ionization–matrix-assisted laser desorption/ionization/Time of flight |
| CHCA | alpha-cyano-4-hydroxycinnamic acid |
| CID | collision-induced dissociation |
| CRC | colorectal cancer |
| LC | liquid chromatography |
| FAP | familial adenomatous polyposis |
| FDR | false discovery rate |
| fpA | fibrinopeptide A |
| LMW | low molecular weight |
| MS | mass spectrometry |
| MS/MS | tandem mass spectrometry |
| nano-HPLC-ESI | nanoscale high-pressure liquid chromatography–electron spray ionization |
| SAM | significant analysis of microarrays |
| SAMR | implementation of SAM in the R language |
| SDQS | SeraDeg quality score |
| TFA | trifluoroacetic acid |