Table 1.
Defensin accession numbers, protein secretion probability, and cysteine motifs/connectivity.
| a/a | Acronym | NCBI Accession (Nucleotide/Protein) | SOLYC Number | Motif | Theoretical PI | Cys | Predicted Connectivity | Secretion Probability |
|---|---|---|---|---|---|---|---|---|
| 1 | SlDEF1 | NM_001247943/NP_001234872 | Solyc07g007750.3.1 | C-X10-C-X5-C-X3-C-X9-C-X6-C-X1-C-X3-C | 8.96 | 8 | 1–8, 2–5, 3–6, 4–7 | 0.934 |
| 2 | SlDEF2a | XR_003246738/XP_025886757 | Solyc05g150107.1.1 | C-X5-C-X4-C-X6-C-X4-C-X1-C-X11-C-X5-C- C-X3-C-X6-C-X4-C-X1-C | 6.76 | 12 | 1–10, 2–5, 3–8, 4–7, 6–9 | 0.981 |
| 3 | SlDEF2b | XR_003246738/XP_019069532 | Solyc05g150107.1.1 | C-X5-C-X4-C-X6-C-X4-C-X1-C-X11-C-X5-C- C-X3-C-X6-C-X4-C-X1-C | 6.76 | 12 | 1–10, 2–5, 3–8, 4–7, 6–9 | 0.957 |
| 4 | SlDEF3 | NM_001328663/NP_001315592 | Solyc07g006380.3.1 | C-X10-C-X5-C-X3-C-X9-C-X6-C-X1-C-X3-C | 6.56 | 8 | 1–8, 2–5, 3–6, 4–7 | 0.989 |
| 5 | SlDEF4 | XM_004242790/XP_004242838 | Solyc07g009060.4.1 | C-X10-C-X5-C-X3-C-X9-C-X16-C-X1-C-X3-C | 9.25 | 8 | 1–2, 3–6, 4–5, 7–8 | 0.969 |
| 6 | SlDEF5 | XM_010321070/XP_010319372 | Solyc04g008470.3.1 | C-X10-C-X5-C-X3-C-X9-C-X6-C-X1-C-X3-C | 9.54 | 8 | 1–8, 2–5, 3–6, 4–7 | 0.984 |
| 7 | SlDEF6 | XM_004242803/XP_004242851 | Solyc07g009260.3.1 | C-X10-C-X5-C-X3-C-X9-C-X9-C-X1-C-X3-C | 8.99 | 8 | 1–8, 2–5, 3–6, 4–7 | 0.883 |
| 8 | SlDEF7 | NM_001310317/NP_001297246 | Solyc07g007710.4.1 | C-X10-C-X5-C-X3-C-X9-C-X6-C-X1-C-X3-C | 8.98 | 8 | 1–8, 2–5, 3–6, 4–7 | 0.954 |
| 9 | SlDEF8 | NM_001310318/NP_001297247 | Solyc07g007730.4.1 | C-X10-C-X5-C-X3-C-X9-C-X6-C-X1-C-X3-C | 8.77 | 8 | 1–8, 2–5, 3–6, 4–7 | 0.980 |
| 10 | SlDEF9 | NM_001346524/NP_001333453 | Solyc07g007755.1.1 | C-X10-C-X5-C-X3-C-X9-C-X6-C-X1-C-X3-C | 9.14 | 8 | 1–8, 2–5, 3–6, 4–7 | 0.951 |
Secretion probability as predicted by the TargetP 1.1 server (http://www.cbs.dtu.dk/services/TargetP/).