Table 2.
Hepatitis A virus (HAV) strains used during nucleotide sequence analysis.
| Genotype | Strain Name | Geographical Location | GenBank Accession Number | Genomic Region | Source of Characterisation |
|---|---|---|---|---|---|
| IA | GBM | Germany | X75215 | VP1, VP1/P2B | Clinical |
| IB | HM175 | Australia | M14707 | VP1, VP1/P2B | Clinical |
| IB | CFH-HAV | Sierra Leone | HQ246217 | VP1, VP1/P2B | Clinical |
| IB | MBB | North Africa | M20273 | VP1, VP1/P2B | Clinical |
| IB | HAF203 | Brazil | AF268396 | VP1, VP1/P2B | Unknown |
| IB | Banglane2000 | Thailand | LC128713 | VP1, VP1/P2B | Unknown |
| IB | HAV/Egy/BI-11/2015 | Egypt | KX228694 | VP1/P2B | Sewage |
| IB | L-A-1 | China | AF314208 | VP1, VP1/P2B | Unknown |
| IB | GP_66S-1, 67S-1, 106S-1, 109S-1, 110S-1, 111S-1, 112S-1, 112S2-1, 116S-1, 119S-1, 122S-1, 134S-1 | Gauteng, SA | KJ433581 to KJ433592 | VP1 | Clinical |
| IB | GP_131S-1 | Gauteng, SA | KJ207022 | VP1 | Clinical |
| IB | GP_PT66S, 67S, 106S, 109S, 110S, 111S, 112S, 112S2, 115S, 116S, 119S, 122S, 130S, 131S, 134S | Gauteng, SA | KJ492621 to KJ492635 | VP1/P2B | Clinical |
| IB | GP_RV2-20120618-col1 | Gauteng, SA | KJ492595 | VP1 | Surface water |
| IB | GP_11.1085-col7, 11.1085-col8, 11.1145-col1, 11.1145-col2 | Gauteng, SA | KJ492598 to KJ492601 | VP1 | Wastewater discharge |
| IB | GP_RV2-20121112, RV2-20130318, K19-20130225 | Gauteng, SA | KJ492654 to KJ492656 | VP1/P2B | Surface water |
| IB | GP_11.1051, 11.1145, 11.1147, 11.1085 | Gauteng, SA | KJ492657 to KJ492660 | VP1/P2B | Wastewater discharge |
| IB | SZ_PT126S | Swaziland | KJ492643 | VP1/P2B | Clinical |
| IB | SZ_PT29S-1, 126S-1 | Swaziland | KJ433605 to KJ433606 | VP1 | Clinical |
| IB | K_KD-FEB, KD-NOV, KD-DEC, MB-JUL, NR-AUG | Kenya | KJ492671 to KJ492675 | VP1/P2B | Surface water |
| IB | K_PT24S-1 | Kenya | KJ433603 | VP1 | Clinical |
| IB | K_KD-DEC-1, KD-Feb-1 | Kenya | KJ492607, KJ492608 | VP1 | Surface water |
| IB | T_PT34S-1 | Tanzania | KJ433604 | VP1 | Clinical |
| IC | BCN70 | Spain | HQ401240 | VP1 | Clinical |
| IC | Shellfish08-106 | Spain | HQ401253 | VP1 | Food |
| IIA | CF53/Berne | France | AY644676 | VP1, VP1/P2B | Clinical |
| IIB | SLF88 | Sierra Leone | AY644670 | VP1, VP1/P2B | Clinical |
| IIIA | SIM27 | India | FJ227135 | VP1, VP1/P2B | Clinical |
| IIIB | HA-JNG06-90F | Japan | AB258387 | VP1, VP1/P2B | Clinical |
| IV | Cy145 | Philippines | M59286 | VP1, VP1/P2B | Simian |
| V | AGM-27 | Kenya | D00924 | VP1, VP1/P2B | Simian |
| V | KZN_Irr-20130530-1 | KwaZulu-Natal, SA | KP875236 | VP1 | Surface water |
| V | KZN_Irr-20130530-2B | KwaZulu-Natal, SA | KP875241 | VP1/P2B | Surface water |