Table 1.
List of alternative proteins (AltProts) identified to be interacting with the SARS-Cov-2 viral proteins. The co-IP raw data were re-interrogated using OpenProt [18]. The table lists the 56 identified AltProts identified including the name of the gene coding for the RNA transcript, the accession number of the transcript, the name of the AltProt, the type of transcript for which AltProts are issued from and for AltProts originating from mRNA, the location on the mRNA.
| Accession | GN | TA | AltProt | Type | Location | Viral Protein in Interaction |
|---|---|---|---|---|---|---|
| IP_555327 | AC006386.1 | ENST00000624491 | AltAC006386.1 | mRNA | 3’UTR | E |
| IP_581922 | AC018641.7 | ENST00000435950 | AltAC018641.7 | ncRNA | - | orf9b |
| IP_659614 | ANKRD20A11P | ENST00000442192 | AltANKRD20A11P | ncRNA | - | nsp7 |
| IP_187691 | ARL3 | NM_004311.3 | AltARL3 | mRNA | 3’UTR | nsp12 |
| IP_077449 | BATF3 | NM_018664.2 | AltBATF3 | mRNA | CDS | nsp6 |
| IP_2387661 | BCL11A | XM_017004337.1 | AltBCL11A | mRNA | 5’UTR | M |
| IP_565887 | C9orf116 | ENST00000371789 | AltC9orf116 | mRNA | 5’UTR | orf8 |
| IP_075271 | CDC73 | XM_006711537.3 | AltCDC73 | mRNA | CDS | nsp11 |
| IP_766056 | CEP290 | ENST00000547691 | AltCEP290 | mRNA | 5’UTR | nsp11 orf6 orf7a |
| IP_691726 | CTC-398G3.1 | ENST00000483614 | AltCTC-398G3.1 | ncRNA | - | N nsp8 |
| IP_219869 | DGKH | NM_152910.5 | AltDGKH | mRNA | CDS | E orf6 orf7a |
| IP_2336782 | DUSP4 | XM_011544428.2 | AltDUSP4 | mRNA | 5’UTR | nsp6 |
| IP_235699 | EDC3 | ENST00000565602 | AltEDC3 | mRNA | 3’UTR | nsp7 |
| IP_594707 | EEF1A1 | ENST00000309268 | AltEEF1A1 | mRNA | 5’UTR | E nsp14 |
| IP_788706 | EIF2S2P3 | ENST00000428356 | AltEIF2S2P3 | ncRNA | - | E |
| IP_2396759 | GJA5 | XM_017001044.1 | AltGJA5 | mRNA | 5’UTR | nsp8 |
| IP_711582 | HGS | ENST00000577012 | AltHGS | mRNA | 5’UTR | nsp13 |
| IP_775502 | HIGD1AP10 | ENST00000527837 | AltHIGD1AP10 | ncRNA | - | orf10 |
| IP_724315 | HMGN2P3 | ENST00000433603 | AltHMGN2P3 | ncRNA | - | E |
| IP_557348 | HNRNPA1P28 | ENST00000424481 | AltHNRNPA1P28 | ncRNA | - | nsp11 |
| IP_572435 | HSPA8P11 | ENST00000508840 | AltHSPA8P11 | ncRNA | - | N nsp10 nsp11 nsp4 nsp9 orf10 orf3b |
| IP_658154 | HSPD1P7 | ENST00000447985 | AltHSPD1P7 | ncRNA | - | orf9b |
| IP_289249 | KCNE1 | XM_017028342.1 | AltKCNE1 | mRNA | 3’UTR | nsp14 |
| IP_075761 | LAD1 | ENST00000631576 | AltLAD1 | mRNA | CDS | orf9b |
| IP_671071 | LOC101929023 | ENST00000434879 | AltLOC101929023 | ncRNA | - | orf8 |
| IP_2361135 | LOC102723525 | XR_925379.2 | AltLOC102723525 | ncRNA | - | orf10 |
| IP_2268667 | LOC105372714 | XM_017028195.1 | AltLOC105372714 | mRNA | 5’UTR | nsp15 |
| IP_2266298 | LOC107985441 | XR_001754616.1 | AltLOC107985441 | ncRNA | - | nsp15 |
| IP_2354489 | LOC107986350 | XR_001742414.1 | AltLOC107986350 | ncRNA | - | orf3b |
| IP_143572 | LYRM2 | NM_020466.4 | AltLYRM2 | mRNA | 3’UTR | nsp15 |
| IP_745252 | MEG8 | ENST00000553465 | AltMEG8 | ncRNA | - | nsp6 orf3b |
| IP_213668 | METAP2 | XM_005268583.3 | AltMETAP2 | mRNA | CDS | nsp10 nsp6 orf6 |
| IP_729791 | MT1X | ENST00000568370 | AltMT1X | mRNA | 3’UTR | nsp11 nsp6 |
| IP_230046 | NKX2-1-AS1 | ENST00000521292 | AltNKX2-1-AS1 | ncRNA | - | nsp6 |
| IP_597201 | NOP56P1 | ENST00000440030 | AltNOP56P1 | ncRNA | - | orf3b |
| IP_105102 | POC1A | XM_011533561.1 | AltPOC1A | mRNA | CDS | orf9b |
| IP_581419 | RP11-10F11.4 | ENST00000634439 | AltRP11-10F11.4 | ncRNA | - | nsp6 orf6 |
| IP_734708 | RP11-24M17.3 | ENST00000567565 | AltRP11-24M17.3 | ncRNA | - | nsp11 orf3b |
| IP_667059 | RP11-397P13.7 | ENST00000427282 | AltRP11-397P13.7 | ncRNA | - | nsp8 |
| IP_591742 | RP11-471B18.1 | ENST00000407538 | AltRP11-471B18.1 | ncRNA | - | nsp11 nsp6 |
| IP_612631 | RP11-553P9.1 | ENST00000509116 | AltRP11-553P9.1 | ncRNA | - | orf10 |
| IP_639311 | RPL36AP13 | ENST00000457490 | AltRPL36AP13 | ncRNA | - | nsp12 |
| IP_750273 | RPL4P1 | ENST00000496596 | AltRPL4P1 | ncRNA | - | N nsp8 |
| IP_637436 | RPL5P9 | ENST00000448118 | AltRPL5P9 | ncRNA | - | nsp8 |
| IP_597129 | RPS17P1 | ENST00000396783 | AltRPS17P1 | ncRNA | - | orf10 |
| IP_668819 | RPS23P9 | ENST00000448848 | AltRPS23P9 | ncRNA | - | orf8 |
| IP_594653 | SENP6 | ENST00000474906 | AltSENP6 | ncRNA | - | M orf7a |
| IP_769089 | SPRYD4 | ENST00000338146 | AltSPRYD4 | mRNA | 3’UTR | nsp11 orf10 |
| IP_713094 | SSTR2 | ENST00000357585 | AltSSTR2 | mRNA | 3’UTR | orf3b |
| IP_656465 | TUBA3GP | ENST00000410028 | AltTUBA3GP | ncRNA | - | M orf10 orf8 |
| IP_774695 | TUBAP2 | ENST00000530835 | AltTUBAP2 | ncRNA | - | M nsp11 nsp4 nsp6 nsp7 nsp8 orf10 orf6 orf7a orf8 orf9b |
| IP_557241 | TUBB4AP1 | ENST00000450755.1 | Alt TUBB4AP1 | ncRNA | - | orf3a |
| IP_593099 | TUBB2BP1 | ENST00000404155 | AltTUBB2BP1 | ncRNA | - | M nsp11 orf10 orf8 |
| IP_572422 | TUBBP1 | ENST00000518096 | AltTUBBP1 | ncRNA | - | nsp9 |
| IP_665452 | UBE2D3P1 | ENST00000436669 | AltUBE2D3P1 | ncRNA | - | orf7a |
| IP_274314 | ZNF569 | XM_006723046.2 | AltZNF569 | mRNA | 3’UTR | nsp9 |