Table 2.
Sequencing statistics, assembly statistics, and annotation of 45 German A. butzleri strains.
| ID | Sequencing statistics | Assembly statistics | Annotation | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequencing platform | Total number of reads (X1000) | Average read length (bp) | Coverage depth | Genome size | No. contigs | N50 | GC% | Total CDS | No. rRNA | No. tRNA | |
| 16CS0847-3 | Illumina MiSeq | 539.2 | 230 | 52 | 2.12 Mbp | 30 | 114,025 | 26.96 | 2,101 | 3 | 46 |
| 17CS0824 | Illumina MiSeq | 917.0 | 208 | 80 | 2.19 Mbp | 35 | 135,672 | 26.92 | 2,155 | 3 | 47 |
| 17CS1193-1 | Illumina MiSeq | 368.9 | 222 | 34 | 2.23 Mbp | 20 | 201616 | 26.93 | 2,223 | 3 | 46 |
| 17CS1193-2 | Illumina MiSeq | 554.0 | 233 | 54 | 2.23 Mbp | 17 | 237,465 | 26.93 | 2,223 | 3 | 46 |
| 17CS1193-3 | Illumina MiSeq | 473.0 | 233 | 46 | 2.19 Mbp | 22 | 209,048 | 26.89 | 2,181 | 3 | 45 |
| 17CS1197 | Illumina MiSeq | 337.4 | 219 | 31 | 2.21 Mbp | 73 | 63,178 | 27.00 | 2,216 | 3 | 46 |
| 17CS1197-2 | Illumina MiSeq | 533.7 | 225 | 50 | 2.21 Mbp | 47 | 117,432 | 26.99 | 2,224 | 3 | 46 |
| 17CS1197-3 | Illumina MiSeq | 823.1 | 218 | 75 | 2.21 Mbp | 47 | 105,309 | 26.99 | 2,225 | 3 | 46 |
| 17CS1198-1 | Illumina MiSeq | 885.7 | 245 | 91 | 2.16 Mbp | 35 | 181,112 | 26.90 | 2,164 | 3 | 45 |
| 17CS1198-2 | Illumina MiSeq | 910.2 | 217 | 83 | 2.16 Mbp | 35 | 181,142 | 26.90 | 2,166 | 3 | 45 |
| 17CS1198-3 | Illumina MiSeq | 789.5 | 209 | 69 | 2.16 Mbp | 36 | 165,442 | 26.90 | 2,166 | 3 | 46 |
| 16CS0367-AR | Illumina MiSeq | 1,001.3 | 237 | 99 | 2.19 Mbp | 79 | 54,432 | 26.96 | 2,204 | 3 | 46 |
| 16CS0367-1-AR | Illumina MiSeq | 219.9 | 257 | 23 | 2.20 Mbp | 25 | 251,305 | 26.94 | 2,214 | 3 | 45 |
| 16CS0370-1 | Illumina MiSeq | 1,038.6 | 224 | 97 | 2.20 Mbp | 25 | 251,305 | 26.94 | 2,213 | 3 | 45 |
| 16CS0375-1 | Illumina MiSeq | 630.7 | 259 | 68 | 2.20Mbp | 26 | 251,306 | 26.94 | 2,213 | 3 | 46 |
| 16CS0375-2 | Illumina MiSeq | 1,009.2 | 215 | 91 | 2.20 Mbp | 36 | 137,063 | 26.94 | 2,214 | 3 | 46 |
| 16CS0831-1-1 | Illumina MiSeq | 1,566.2 | 173 | 113 | 2.20 Mbp | 34 | 157,075 | 26.94 | 2,211 | 3 | 46 |
| 16CS0831-4-1 | Illumina MiSeq | 759.8 | 231 | 73 | 2.26 Mbp | 24 | 170,136 | 26.91 | 2,255 | 3 | 47 |
| 17CS1200-1 | Illumina MiSeq | 792.7 | 235 | 78 | 2.12 Mbp | 31 | 186,556 | 26.95 | 2,122 | 3 | 46 |
| 17CS1201 | Illumina MiSeq | 1,015.7 | 210 | 89 | 2.12 Mbp | 34 | 157,092 | 26.95 | 2,122 | 3 | 46 |
| 17CS1205-1 | Illumina MiSeq | 315.2 | 202 | 26 | 2.24 Mbp | 61 | 81,235 | 27.06 | 2,311 | 3 | 47 |
| 17CS1205-2 | Illumina MiSeq | 823.7 | 222 | 76 | 2.24 Mbp | 42 | 130,656 | 26.88 | 2,316 | 3 | 47 |
| 17CS1206-1 | Illumina MiSeq | 903.2 | 214 | 81 | 2.24 Mbp | 53 | 103,432 | 26.88 | 2,315 | 3 | 47 |
| 17CS1208-3 | Illumina MiSeq | 333.4 | 209 | 29 | 2.24 Mbp | 64 | 117,355 | 26.89 | 2,311 | 3 | 47 |
| 17CS1167 | Illumina MiSeq | 451.7 | 232 | 44 | 2.21 Mbp | 31 | 117,108 | 26.91 | 2,170 | 3 | 45 |
| 17CS1168 | Illumina MiSeq | 1,422.1 | 246 | 147 | 2.17 Mbp | 40 | 103,522 | 26.92 | 2,143 | 3 | 46 |
| 17CS1056 | Illumina MiSeq | 279.2 | 208 | 24 | 2.19 Mbp | 191 | 22,951 | 26.99 | 2,167 | 3 | 45 |
| 17CS1066 | Illumina MiSeq | 459.5 | 265 | 51 | 2.21 Mbp | 71 | 66,964 | 26.93 | 2,158 | 3 | 46 |
| 17CS1067 | Illumina MiSeq | 410.9 | 241 | 41 | 2.21 Mbp | 102 | 38,333 | 26.93 | 2,160 | 3 | 46 |
| 17CS1068-1 | Illumina MiSeq | 1,215.5 | 217 | 110 | 2.21 Mbp | 29 | 160,528 | 26.91 | 2,170 | 3 | 46 |
| 17CS1068-2 | Illumina MiSeq | 368.6 | 201 | 31 | 2.21 Mbp | 105 | 32,597 | 26.94 | 2,148 | 3 | 45 |
| 17CS0916-1 | Illumina MiSeq | 1,019.0 | 221 | 94 | 2.03 Mbp | 24 | 204,435 | 27.07 | 2,066 | 3 | 46 |
| 17CS0916-2 | Illumina MiSeq | 2,003.3 | 210 | 176 | 2.03 Mbp | 25 | 204,435 | 27.07 | 2,066 | 3 | 46 |
| 16CS0857-1 | Illumina MiSeq | 812.9 | 234 | 80 | 2.06 Mbp | 37 | 168,312 | 26.99 | 2,082 | 3 | 46 |
| 16CS0861-1 | Illumina MiSeq | 2,967.4 | 124 | 154 | 2.18 Mbp | 64 | 69,382 | 26.92 | 2,149 | 3 | 53 |
| 17CS1092-1 | Illumina MiSeq | 860.1 | 211 | 76 | 2.15 Mbp | 44 | 111,096 | 27.07 | 2,177 | 3 | 45 |
| 17CS1092-2 | Illumina MiSeq | 1,008.8 | 204 | 86 | 2.15 Mbp | 46 | 102,709 | 27.07 | 2,174 | 3 | 46 |
| 17CS1095 | Illumina MiSeq | 818.2 | 213 | 73 | 2.11 Mbp | 48 | 117,56 | 27.10 | 2,127 | 3 | 46 |
| 16CS0815-2 | Illumina MiSeq | 841.5 | 228 | 80 | 2.19 Mbp | 27 | 154,166 | 26.86 | 2,191 | 3 | 46 |
| 16CS0820-1 | Illumina MiSeq | 1,353.3 | 179 | 101 | 2.12 Mbp | 21 | 18,643 | 26.98 | 2,117 | 3 | 45 |
| 16CS0820-2 | Illumina MiSeq | 1,178.6 | 200 | 99 | 2.12 Mbp | 22 | 199,264 | 27.05 | 2,124 | 3 | 46 |
| 16CS0823-1 | Illumina MiSeq | 572.6 | 226 | 54 | 2.12 Mbp | 23 | 255,949 | 27.05 | 2,122 | 3 | 46 |
| 16CS0823-2 | Illumina MiSeq | 563.8 | 229 | 54 | 2.13 Mbp | 35 | 135,934 | 27.04 | 2,142 | 3 | 46 |
| 17CS0965-1 | Illumina MiSeq | 849.5 | 218 | 77 | 2.43 Mbp | 60 | 95,695 | 26.84 | 2,493 | 3 | 46 |
| 17CS0965-B | Illumina MiSeq | 327.8 | 227 | 31 | 2.18 Mbp | 147 | 26,561 | 26.99 | 2,166 | 3 | 46 |