Table 3.
Strain | Subgroup | aspA | atpA | glnA | gltA | glyA | pgm | tkt | ST |
---|---|---|---|---|---|---|---|---|---|
16CS0367-1-AR | D | 4 | 4 | 40 | 19 | 471, 534 | 194 | 158 | New |
16CS0367-AR | D | 4 | 4 | 40 | 19 | 471, 534 | 194 | 158 | New |
16CS0370-1 | D | 4 | 4 | 40 | 19 | 471, 534 | 194 | 158 | New |
16CS0375-1 | D | 4 | 4 | 40 | 19 | 471, 534 | 194 | 158 | New |
16CS0375-2 | D | 4 | 4 | 40 | 19 | 471, 534 | 194 | 158 | New |
16CS0815-2 | – | 182 | 4 | 40 | 136 | 413? | 211 | 87 | New |
16CS0817-2 | – | 177 | 39 | 40 | 123 | ~511 | 194 | 24 | New |
16CS0820-1 | J | 47 | 217 | 4 | 129 | ~694 | 123 | 37 | New |
16CS0820-2 | K | 47 | 217 | 9 | 129 | ~615 | 123 | 37 | New |
16CS0821-2 | J | 47 | 217 | 4 | 129 | 694? | 123 | 37 | New |
16CS0823-1 | K | 47 | 217 | 9 | 129 | ~632 | 123 | 37 | New |
16CS0823-2 | – | ~229 | 4 | 34 | 4 | 488 | 102 | 63 | New |
16CS0831-1-1 | D | 4 | 4 | 40 | 19 | 471, 534 | 194 | 158 | New |
16CS0831-4-1 | – | 81 | 69 | 26 | 66 | 182 | 124 | 86 | 205 |
16CS0847-3 | – | 4 | 12 | 1 | 19 | 346 | ~103 | 24 | New |
16CS0857-1 | – | 20 | 7 | 20 | 7 | 186 | 8 | 7 | New |
16CS0861-1 | – | 4 | 12 | 1 | 19 | ~418 | 213 | 160 | New |
17CS0824 | – | 4 | 58 | 44 | 19 | 150 | 4 | 89 | New |
17CS0916-1 | H | 20 | 7 | 20 | 23 | 186? | 45 | 37 | New |
17CS0916-2 | H | 20 | 7 | 20 | 23 | 186? | 45 | 37 | New |
17CS0965-1 | – | 153 | 39 | 1 | 19 | 184 | 11 | ~9 | New |
17CS0965-B | – | 20 | 39 | 11 | 11 | 513 | 26 | 55 | New |
17CS1056 | – | 37 | 133 | 44 | 12 | ~379 | 278 | 160 | New |
17CS1066 | G | 4 | 4 | 4 | 4 | ~139 | 4 | 89 | New |
17CS1067 | G | 4 | 4 | 4 | 4 | 3 | 4 | 89 | 17 |
17CS1068-1 | G | 4 | 4 | 4 | 4 | 139 | 4 | 89 | 18 |
17CS1068-2 | G | 4 | 4 | 4 | 4 | ~139 | 4 | 89 | New |
17CS1092-1 | I | 153 | 4 | 40 | 19 | 497? | 98 | 158 | New |
17CS1092-2 | I | 153 | 4 | 40 | 19 | 489? | 98 | 158 | New |
17CS1095 | – | 153 | 4 | 40 | 19 | 528? | 98 | 158 | New |
17CS1167 | G | 4 | 4 | 4 | 4 | 139 | 4 | 89 | 18 |
17CS1168 | – | ~69 | 12 | 9 | 19 | 410 | 290 | 165 | New |
17CS1193-1 | A | 4 | 4 | 44 | 12 | 376 | 4 | 160 | New |
17CS1193-2 | A | 4 | 4 | 44 | 12 | 376 | 4 | 160 | New |
17CS1193-3 | – | 4 | 4 | 51 | 126 | 471 | 20 | 89 | New |
17CS1197 | B | ~15 | 4 | 40 | 19 | ~677 | 63 | 9 | New |
17CS1197-2 | B | ~15 | 4 | 40 | 19 | ~677 | 63 | 9 | New |
17CS1197-3 | B | ~15 | 4 | 40 | 19 | ~677 | 63 | 9 | New |
17CS1198-1 | C | 4 | 4 | 4 | 19 | 351 | 219 | 158 | New |
17CS1198-2 | C | 4 | 4 | 4 | 19 | 351 | 219 | 158 | New |
17CS1198-3 | C | 4 | 4 | 4 | 19 | 351 | 219 | 158 | New |
17CS1200-1 | E | 41 | 133 | 51 | 19 | 510 | 4 | 160 | New |
17CS1201 | E | 41 | 133 | 51 | 19 | 510 | 4 | 160 | New |
17CS1205-1 | F | 37 | 23 | 7 | ~165 | 659 | 26 | New | New |
17CS1205-2 | F | 37 | 23 | 7 | ~165 | 659 | 26 | New | New |
17CS1206-1 | F | 37 | 23 | 7 | ~165 | 659 | 26 | New | New |
17CS1208-3 | F | 37 | 23 | 7 | ~165 | 659 | 26 | New | New |
Ab_CR1143 | – | 23 | 5 | 24 | 44 | 112 | 35 | 55 | New |
Ab_3711 | – | 20 | 2 | 1 | ~15 | ~449 | 71 | 165 | New |
Ab_CR1132 | – | 240 | 133 | 40 | 12 | 541 | 278 | 160 | 519 |
Ab_1711 | – | 13 | 4 | 40 | 15,15 | ~536 (545) | 102 | 158 | New |
Ab_CR461 | – | 5 | 5 | 24 | 27 | 80 | 62 | 20 | New |
Ab_4511 | – | 23 | 44 | 24 | 44 | 112 | 35 | 20 | 510 |
Ab_2211 | – | 234 | 15 | 26 | 164 | 375 | 260 | 176 | 460 |
Ab_2811 | – | 23 | 44 | 24 | 2 | 769? (137) | 62 | 20 | New (107) |
Ab_A103 | – | 20 | ~39 | 11 | 11 | 98 | 87 | 178 | New |
Ab_CR424 | – | 23 | 7 | 33 | 38 | 156 (~745) | ~120 | 174 | New |
Ab_CR641 | – | 23 | 44 | 24 | 15 | 124 | 55 | 20 | 108 |
Ab_DQ20dA1 | – | 59 | 47 | 26 | 53 | ~205 | 88 | 60 | New |
Ab_DQ64A1 | – | 10 | 20 | 11 | 19 | 192 | 123 (134) | 11 | New |
Ab_CR604 | – | 26 | 22 | 4 | 44 | ~24 | 55 | 165 | New |
Ab_4211 | – | 20 | 25 | 7 | 2 | ~595 (~465) | 32 | 2 | New |
Ab_DQ40A1 | – | 4 | 164 | 40 | 19 | 418 (528) | 102 | 4 | New |
Ab_1426_2003 | – | 8 | 8 | 8 | 8 | 191 (9) | 9 | 8 | New (47) |
Ab_CR502 | – | 20 | 39 | 11 | 15 | ~103 (~666) | ~26 | 2 | New |
Ab_A111 | – | 20 | 12 | 11 | 19 | 112? (~692) | 127 | 88 | New |
Ab_CR892 | – | 10 | 14 | 41 | 30 | 747? (~602) | ~263 | ~31 | New |
Ab_CR891 | – | 21 | 22 | 21 | 24 | 48 | 27 | 25 | 94 |
Ab_DQ31A1 | – | 55 | 45 | 26 | 48 | 113 | 85 | 59 | 172 |
7h1h | – | 150 | 4 | 1 | 122 | ~370 | 194 | 52 | New |
6V | – | 236 | 161 | 1 | 183 | 521 | 296 | 207 | 537 |
55 | – | 332 | 8 | 1 | 166 | 685 | 367 | 292 | 675 |
RMIII | – | 5 | 5 | 5 | 15 | 66,176 | 11 | 10 | New |
RMI | – | 5 | 5 | 5 | 15 | 66,176 | 11 | 10 | New |
NCTC 12481 | – | 1 | 1 | 1 | 1 | 1,142 | 1 | 1 | New |
The allele loci that do not agree with previous results are written in bold. The alleles identified by Isidro et al. (2020) are shown in brackets. (~ = novel full length allele similar to a known allele; ? = allele partial matches to a known allele).