Table 4.
Genotype-phenotype correlations regarding antibiotic resistance detected in this study.
| Strain | DC | tetA_gene | TET | CIP | gyrA_gene* | AMP | bla2_gene | bla3_gene | hcpC_gene | mrdA_gene | pbpB_gene | pbpF_gene | CTX | Urease assay | Urease cluster |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16CS0847-3 | S | S | S | S | R | + | |||||||||
| 17CS0824 | R | R | S | S | R | + | |||||||||
| 17CS1193-1 | S | S | S | R | R | + | |||||||||
| 17CS1193-2 | S | S | S | R | R | + | |||||||||
| 17CS1193-3 | S | S | S | S | R | + | |||||||||
| 17CS1197 | R | R | S | S | R | + | |||||||||
| 17CS1197-2 | R | R | S | S | R | + | |||||||||
| 17CS1197-3 | R | R | S | S | R | + | |||||||||
| 17CS1198-1 | S | S | S | S | R | + | |||||||||
| 17CS1198-2 | S | S | S | S | R | + | |||||||||
| 17CS1198-3 | S | S | S | S | R | Ø | |||||||||
| 16CS0367-AR | R | R | S | S | R | + | |||||||||
| 16CS0367-1-AR | R | R | S | S | R | + | |||||||||
| 16CS0370-1 | R | R | S | S | R | + | |||||||||
| 16CS0375-1 | R | R | S | S | R | + | |||||||||
| 16CS0375-2 | R | R | S | S | R | + | |||||||||
| 16CS0831-1-1 | R | R | S | R | R | + | |||||||||
| 16CS0831-4-1 | R | R | S | R | R | Ø | |||||||||
| 17CS1200-1 | S | S | S | S | R | + | |||||||||
| 17CS1201 | S | S | S | S | R | + | |||||||||
| 17CS1205-1 | S | S | S | R | R | + | |||||||||
| 17CS1205-2 | R | S | S | R | R | + | |||||||||
| 17CS1206-1 | R | S | S | R | R | + | |||||||||
| 17CS1208-3 | R | S | S | R | R | + | |||||||||
| 17CS1167 | R | S | S | S | R | + | |||||||||
| 17CS1168 | S | S | S | S | R | + | |||||||||
| 17CS1056 | S | S | S | S | R | + | |||||||||
| 17CS1066 | S | S | S | R | R | + | |||||||||
| 17CS1067 | S | S | S | R | R | + | |||||||||
| 17CS1068-1 | R | R | S | R | R | + | |||||||||
| 17CS1068-2 | R | R | S | R | R | + | |||||||||
| 17CS0916-1 | S | R | R | R | R | + | |||||||||
| 17CS0916-2 | R | R | R | R | R | + | |||||||||
| 16CS0857-1 | R | R | S | R | R | + | |||||||||
| 16CS0861-1 | R | S | S | S | R | + | |||||||||
| 17CS1092-1 | R | R | S | S | R | + | |||||||||
| 17CS1092-2 | S | S | S | S | R | + | |||||||||
| 17CS1095 | S | S | S | S | R | + | |||||||||
| 16CS0815-2 | S | S | S | S | R | + | |||||||||
| 16CS0817-2 | S | S | S | S | R | + | |||||||||
| 16CS0820-1 | R | R | S | R | R | + | |||||||||
| 16CS0820-2 | R | R | S | S | R | + | |||||||||
| 16CS0821-2 | R | R | S | S | R | + | |||||||||
| 16CS0823-1 | R | R | S | R | R | + | |||||||||
| 16CS0823-2 | R | S | S | S | R | + | |||||||||
| 17CS0965-1 | S | S | S | S | R | + | |||||||||
| 17CS0965-B | R | S | S | S | R | + |
The determined phenotype of the 47 German strains is presented next to the associated genotype, their presence/absence is marked by colored/ white boxes.
*
Presence of the mutation Thr-85-Ile.
R, resistant phenotype; S, susceptible phenotype; +, positive urease assay; Ø, negative urease assay; DC, doxycycline; TET, tetracycline; CIP, ciprofloxacin; AMP, ampicillin; CTX, cefotaxime.