Table 1.

Transcriptome datasets from GEO database considered in this study for in vitro Mtb for 4 different dormancy models.

GEO ID and platform	Dormancy inducing condition	Conditions and number of samples	Stages and timepoints of dormancy	References
GSE8786 (GPL5714)	Hypoxia	Exponential growth (35), pre-dormancy (6) and Non-replicative persistence (29)	NRP1 (Day 6–8), NRP2 (Day 10–20), NRP3 (Day 30–80)	Voskuil et al., 2004
GSE10391 (GPL4388)	Multiple stress (Low O2, acidic pH, low glycerol)	Exponential growth (47), pre-dormancy (39) and dormancy (8)	Dormancy (Day 9–18)	Deb et al., 2009
GSE66408 (GPL18768)	Potassium Deficiency	Exponential growth (3) and dormancy (9)	Early (Day 14), Mid (Day 24) and Late dormancy (Day 34)	Ignatov et al., 2015
GSE84554 (GPL4057)	Iron Deficiency	Exponential growth (24), pre-dormancy (12) and dormancy (18)	Dormancy (Day 7–14)	Kurthkoti et al., 2017