Table 2.
Reactions commonly upregulated in 3 or more dormancy models.
| Reaction ID | Reaction name | Subsystem | GPR |
|---|---|---|---|
| ASP1DC | Aspartate 1-decarboxylase | Alanine, Aspartate, and Glutamate Metabolism | Rv3601c |
| P5CRx | Pyrroline-5-carboxylate reductase(nadh) | Arginine and Proline Metabolism | Rv0500 |
| GCCc | Glycine-cleavage complex | Citric Acid Cycle | Rv3303c |
| EX_h2 | H2 exchange | Extracellular exchange | |
| DESAT16 | Palmitoyl CoA desaturase n C160CoA n C161CoA | Fatty acid metabolism | Rv3229c |
| FACOAL160 | Fatty acid CoA ligase hexadecanoate | Fatty Acid Metabolism | Rv3826 or Rv1529 or Rv1185c or Rv2590 |
| FACOAL161 | Fatty-acid CoA ligase hexadecenoate | Fatty Acid Metabolism | Rv0035 or Rv0099 or Rv0119 or Rv0166 or 30 others |
| GCCa | Glycine-cleavage complex | Glycolysis/Gluconeogenesis | Rv1832 |
| GCCb | Glycine-cleavage complex | Glycolysis/Gluconeogenesis | Rv2211c and Rv1826 |
| GXRA | Glycine dehydrogenase (deamidating) | Glyoxylate metabolism | Rv2780 |
| QRr | QRr | Oxidative phosphorylation | Rv3777 |
| L_LACD2 | L-Lactate dehydrogenase (ubiquinone) | Pyruvate metabolism | Rv1872c |
| FHL | Formate-hydrogen lyase | Redox metabolism | Rv0084 |
| H2td | Hydrogen transport | Transport |
Details of subsystems and GPRs (Gene Protein Rule) are taken from iEK1011.