Table 2. Sequenced inbred mouse strains used to select the content of the genotyping array.
| Background | Strain group | Diagnostic type | Full | Partial | Reference |
|---|---|---|---|---|---|
| 129P2/OlaHsd | 129P | Substrain | 25 | 0 | Keane et al. (2011); Doran et al. (2016) |
| 129P3/J | 129P | Substrain | 54 | 0 | M. T. Ferris et al., unpublished results |
| 129S1/SvImJ | 129S | Substrain | 82 | 13 | Keane et al. (2011); Doran et al. (2016) |
| 129S2/SvHsd | 129S | Substrain | 7 | 1 | M. T. Ferris et al., unpublished results |
| 129S2/SvPasOrlRj | 129S | Substrain | 36 | 0 | M. T. Ferris et al., unpublished results |
| 129S4/SvJaeJ | 129S | Substrain | 45 | 0 | M. T. Ferris et al., unpublished results |
| 129S5/SvEvBrd | 129S | Substrain | 12 | 0 | Keane et al. (2011); Doran et al. (2016) |
| 129S6/SvEvTac | 129S | Substrain | 41 | 0 | M. T. Ferris et al., unpublished results |
| 129T2/SvEmsJ | 129T | Substrain | 38 | 0 | M. T. Ferris et al., unpublished results |
| 129X1/SvJ | 129X | Substrain | 39 | 0 | M. T. Ferris et al., unpublished results |
| A/J | A | Substrain | 58 | 7 | Keane et al. (2011); Doran et al. (2016) |
| A/JCr | A | Substrain | 53 | 0 | M. T. Ferris et al., unpublished results |
| A/JOlaHsd | A | Substrain | 38 | 0 | M. T. Ferris et al., unpublished results |
| BALB/cAnNCrl | BALB/c | Substrain | 36 | 2 | M. T. Ferris et al., unpublished results |
| BALB/cAnNHsd | BALB/c | Substrain | 109 | 4 | M. T. Ferris et al., unpublished results |
| BALB/cByJ | BALB/c | Substrain | 3 | 4 | M. T. Ferris et al., unpublished results |
| BALB/cByJRj | BALB/c | Substrain | 19 | 0 | M. T. Ferris et al., unpublished results |
| BALB/cJ | BALB/c | Substrain | 103 | 3 | Keane et al. (2011); Doran et al. (2016) |
| BALB/cJBomTac | BALB/c | Substrain | 47 | 0 | M. T. Ferris et al., unpublished results |
| C3H/HeJ | C3H/He | Substrain | 166 | 2 | Keane et al. (2011); Doran et al. (2016) |
| C3H/HeNCrl | C3H/He | Substrain | 39 | 0 | M. T. Ferris et al., unpublished results |
| C3H/HeNHsd | C3H/He | Substrain | 39 | 1 | M. T. Ferris et al., unpublished results |
| C3H/HeNRj | C3H/He | Substrain | 42 | 0 | M. T. Ferris et al., unpublished results |
| C3H/HeNTac | C3H/He | Substrain | 45 | 14 | M. T. Ferris et al., unpublished results |
| C57BL/6J | C57BL/6 | Substrain | 136 | 20 | Sarsani et al. (2019) |
| C57BL/6JBomTac | C57BL/6 | Substrain | 41 | 2 | M. T. Ferris et al., unpublished results |
| C57BL/6JOlaHsd | C57BL/6 | Substrain | 43 | 0 | M. T. Ferris et al., unpublished results |
| C57BL/6NJ | C57BL/6 | Substrain | 37 | 7 | Keane et al. (2011); Doran et al. (2016) |
| C57BL/6NRj | C57BL/6 | Substrain | 20 | 0 | M. T. Ferris et al., unpublished results |
| B6N-Tyr < c-Brd>/BrdCrCrl | C57BL/6 | Substrain | 21 | 10 | M. T. Ferris et al., unpublished results |
| DBA/1J | DBA/1 | Substrain | 70 | 0 | Keane et al. (2011); Doran et al. (2016) |
| DBA/1LacJ | DBA/1 | Substrain | 77 | 2 | M. T. Ferris et al., unpublished results |
| DBA/1OlaHsd | DBA/2 | Substrain | 32 | 0 | M. T. Ferris et al., unpublished results |
| DBA/2J | DBA/2 | Substrain | 112 | 0 | Keane et al. (2011); Doran et al. (2016) |
| DBA/2JOlaHsd | DBA/2 | Substrain | 39 | 0 | M. T. Ferris et al., unpublished results |
| DBA/2JRj | DBA/2 | Substrain | 30 | 0 | M. T. Ferris et al., unpublished results |
| DBA/2NCrl | DBA/2 | Substrain | 85 | 14 | M. T. Ferris et al., unpublished results |
| DBA/2NTac | DBA/2 | Substrain | 36 | 10 | M. T. Ferris et al., unpublished results |
| FVB/NCrl | FVB | Substrain | 47 | 0 | M. T. Ferris et al., unpublished results |
| FVB/NHsd | FVB | Substrain | 39 | 1 | M. T. Ferris et al., unpublished results |
| FVB/NJ | FVB | Substrain | 72 | 7 | Keane et al. (2011); Doran et al. (2016) |
| FVB/NRj | FVB | Substrain | 47 | 0 | M. T. Ferris et al., unpublished results |
| FVB/NTac | FVB | Substrain | 37 | 0 | M. T. Ferris et al., unpublished results |
| NOD/MrkTac | NOD | Substrain | 33 | 0 | M. T. Ferris et al., unpublished results |
| NOD/ShiLtJ | NOD | Substrain | 51 | 3 | Keane et al. (2011); Doran et al. (2016) |
| Subtotal | 2281 | 127 | |||
| 129S | 129S | Strain group | 17 | 0 | |
| A | A | Strain group | 57 | 0 | |
| BALB/c | BALB/c | Strain group | 125 | 0 | |
| C3H/He | C3H/He | Strain group | 45 | 0 | |
| C57BL/10 | C57BL/10 | Strain group | 291 | 0 | Mortazavi et al. 2020 |
| C57BL/6 | C57BL/6 | Strain group | 19 | 0 | |
| DBA/1 | DBA/1 | Strain group | 5 | 0 | |
| DBA/2 | DBA/2 | Strain group | 62 | 0 | |
| FVB/N | FVB/N | Strain group | 2 | 0 | |
| NZO | NZO | Strain group | 12 | 0 | Keane et al. (2011); Doran et al. (2016) |
| Subtotal | 635 | 0 | |||
| Total | 2916 | 127 | |||
The table provides the strain name and group, the number and type for both fully and partial diagnostic SNPs, and the source of the whole-genome sequencing data.