Figure 8.
Identification of the causal gene for the locus dmG5.2. (a) Local Manhattan plot (top) and LD heatmap (bottom) surrounding the peak of dmG5.2; (b) five genes predicted in the LD block region and SNP variation of the candidate gene Csa5G606470 between the highly susceptible (HS) and highly resistant (HR) lines (see Supplementary File 5); (c) disease index (DI) comparison between haplotypes of the HS and HR lines (see Supplementary File 3); (d) RPKM of the candidate gene Csa5G606470 based on the transcriptome of PRJNA285071 (data obtained from http://cucurbitgenomics.org/rnaseq/cu/19) [24]. * and ** indicate significance at p < 0.05 and p < 0.01, respectively.