Table 1.

Summary of the genetic diversity in the subgenomes and chromosomes of 411 wheat accessions and evaluation of the effective number of independent SNPs, including suggested P‐value thresholds

Chromosome	No. of markers	Effective number	Suggested P‐value	% markers	Length (Mb)	Marker density	He	PIC	LD (Mb)
1A	23,120	5,255	1.90E‐04	6.11	594.02	38.92	0.68	0.27	2.37
2A	26,079	5,825	1.72E‐04	6.89	780.76	33.40	0.75	0.30	2.38
3A	16,040	4,234	2.36E‐04	4.24	750.73	21.37	0.70	0.28	1.64
4A	19,191	4,170	2.40E‐04	5.07	744.54	25.78	0.66	0.27	4.06
5A	20,430	4,533	2.21E‐04	5.40	709.76	28.78	0.74	0.30	4.14
6A	15,935	3,554	2.81E‐04	4.21	617.97	25.79	0.69	0.28	2.40
7A	24,184	6,124	1.63E‐04	6.39	736.69	32.83	0.65	0.26	2.03
1B	19,684	4,748	2.11E‐04	5.20	689.38	28.55	0.68	0.27	4.15
2B	27,097	6,988	1.43E‐04	7.16	801.25	33.82	0.70	0.28	2.88
3B	44,479	7,352	1.36E‐04	11.75	830.7	53.54	0.57	0.23	7.45
4B	12,690	2,231	4.48E‐04	3.35	673.47	18.84	0.71	0.28	3.09
5B	31,251	6,135	1.63E‐04	8.26	713.02	43.83	0.72	0.29	4.35
6B	21,231	5,523	1.81E‐04	5.61	720.95	29.45	0.72	0.29	2.95
7B	16,396	3,221	3.10E‐04	4.33	750.61	21.84	0.68	0.27	3.29
1D	10,210	2,561	3.90E‐04	2.70	495.44	20.61	0.71	0.28	1.98
2D	10,119	3,453	2.90E‐04	2.67	651.81	15.52	0.72	0.29	3.28
3D	6,748	6,424	1.56E‐04	1.78	615.48	10.96	0.62	0.25	2.29
4D	3,664	1,024	9.77E‐04	0.97	509.85	7.19	0.68	0.27	0.89
5D	7,190	2,227	4.49E‐04	1.90	566.04	12.70	0.66	0.27	0.86
6D	7,052	2,242	4.46E‐04	1.86	473.56	14.89	0.69	0.27	0.62
7D	9,182	1,010	9.90E‐04	2.43	638.65	14.38	0.67	0.27	1.09
A genome	144,979			38.31	4934.47	29.38	0.70	0.28	2.60
B genome	172,828			45.67	5179.38	33.37	0.68	0.27	5.50
D genome	54,165			14.31	3950.83	13.71	0.68	0.27	1.30
Total	371,972				14064.68	26.45	0.69	0.28	3.20
Average			3.23E‐04