Table 3.

Significant SNPs associated with nodulation in Middle American genotypes (redundant markers were removed).

Significance level*	Chr	SNP	Position (bp)	MAF	−log10(P)	Allele effect
p < 0.01	6	S06_28198455	28,198,455	0.252	7.46	−0.318
	6	S06_28203687	28,203,687	0.712	7.38	0.308
	6	S06_28212045	28,212,045	0.261	7.25	−0.306
	6	S06_28256196	28,256,196	0.297	7.18	−0.305
	6	S06_28142432	28,142,432	0.293	6.96	−0.319
p < 0.05	6	S06_28040985	28,040,985	0.703	6.82	0.303
	6	S06_28242723	28,242,723	0.275	6.80	−0.304
	6	S06_28260240	28,260,240	0.261	6.58	−0.298
	6	S06_28184429	28,184,429	0.694	6.55	0.300
	6	S06_28252919	28,252,919	0.297	6.44	−0.293
	6	S06_28153238	28,153,238	0.698	6.38	0.306
	6	S06_28045860	28,045,860	0.707	6.34	0.297
	6	S06_28249110	28,249,110	0.284	6.33	−0.300
	6	S06_28227691	28,227,691	0.703	6.20	0.292
	6	S06_28228447	28,228,447	0.293	6.19	−0.283
	6	S06_28087238	28,087,238	0.707	6.11	0.291
	6	S06_28257207	28,257,207	0.694	5.94	0.283
	6	S06_28077346	28,077,346	0.257	5.74	−0.298
	6	S06_27925696	27,925,696	0.716	5.57	0.290
	6	S06_28066399	28,066,399	0.306	5.49	−0.274
	6	S06_28022524	28,022,524	0.73	5.39	0.281
	6	S06_28273143	28,273,143	0.275	5.17	−0.263