Table 4.

Significant SNPs associated with %NDFA in Middle American genotypes (redundant markers were removed).

Significance level	Chr	SNP	Position (bp)	MAF	−log10(p value)	Allele effect
p < 0.01	9	S09_25892359	25,892,359	0.156	5.32	7.461
	8	S08_28424570	28,424,570	0.486	4.55	−12.486
	6	S06_10913425	10,913,425	0.514	4.18	−10.089
	11	S11_32896738	32,896,738	0.401	4.06	9.660
	3	S03_5244212	5,244,212	0.137	4.04	8.347
	9	S09_6000997	6,000,997	0.896	3.80	−9.593
	8	S08_15801341	15,801,341	0.491	3.73	−10.960
	6	S06_10913399	10,913,399	0.505	3.71	−8.890
	3	S03_23219229	23,219,229	0.052	3.64	−17.289
	8	S08_62446399	62,446,399	0.33	3.60	−4.535
p < 0.05	10	S10_24164888	24,164,888	0.052	3.58	−13.561
	2	S02_8646280	8,646,280	0.344	3.48	6.645
	8	S08_61984614	61,984,614	0.425	3.47	6.321
	5	S05_19573422	19,573,422	0.269	3.40	−5.613
	8	S08_61970086	61,970,086	0.401	3.34	−9.526
	4	S04_42699708	42,699,708	0.377	3.33	−7.919
	11	S11_26070577	26,070,577	0.448	3.31	6.932
	8	S08_51857313	51,857,313	0.061	3.30	−12.146
	8	S08_61995491	61,995,491	0.184	3.24	−5.116
	10	S10_27861921	27,861,921	0.476	3.20	6.583
	10	S10_13747196	13,747,196	0.061	3.19	10.334
	8	S08_62397050	62,397,050	0.16	3.18	−7.471
	9	S09_34108296	34,108,296	0.127	3.16	6.586
	9	S09_37907474	37,907,474	0.344	3.16	−6.651
	2	S02_14339482	14,339,482	0.193	3.10	7.117