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. 2020 Dec 28;10:22389. doi: 10.1038/s41598-020-79225-x

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© The Author(s) 2020

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

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Midpoint-rooted maximum-likelihood phylogeny of 56 S. capitis isolates and presence of resistance genes based on a 75% core genome. Different centres are identified as c1–c4 and reference isolates named r1 (NRCS-A prototype strain CR01), r2 (CCUG 55892), and r3 (CCUG 35173). All isolates except r1 were isolated in Sweden. The settings where all Swedish strains were isolated are presented in colour: yellow = air, green = community, blue = neonatal, red = PJI, and white = no data. From c1 was included nasal isolates (n = 20), PJI isolates (n = 4) and NICU isolates (n = 3), from c2 operating theatre air (n = 4), from c3 PJI isolates (n = 12) and NICU isolates (n = 3) and from c4 PJI isolates (n = 5) and NICU isolates (n = 3). The phylogeny highlighted the subsp. capitis, Basal, and NRCS-A clade sublineages. Black blocks represent presence of genes mediating antibiotic resistance and SCCmec type.