Table 1.
Representation of protein families that use a metallocofactor in the HMP assembled stool metagenomes above a mean threshold of 0.5 hits/1000 genes
| Pfam | Pfam description | Mean representation in stool metagenomes (hits/1000 genes) |
|---|---|---|
| PF04055 | Radical SAM superfamily | 2.6 |
| PF00149 | Calcineurin-like phosphoesterase | 1.5 |
| PF001609 | Transposase DDE domain | 1.4 |
| PF00293 | NUDIX domain | 0.76 |
| PF01546 | Peptidase family M20/M25/M40 | 0.66 |
| PF13408 | Recombinase Zn β-ribbon domain | 0.65 |
| PF00383 | CMP/dCMP deaminase Zn-binding domain | 0.63 |
| PF01807 | CHC2-type Zn finger domain | 0.61 |
| PF01966 | HD domain | 0.61 |
| PF00557 | Metallopeptidase family M24 | 0.60 |