TABLE 3.
Functional categorization of genes with proT codon usage above 60%
| Gene ID | Functional category | % proT |
|---|---|---|
| Rv0596c | Virulence, detoxification, adaptation | 60 |
| Rv1952 | Virulence, detoxification, adaptation | 60 |
| Rv2865 | Virulence, detoxification, adaptation | 60 |
| Rv2549c | Virulence, detoxification, adaptation | 66.66666667 |
| Rv1956 | Virulence, detoxification, adaptation | 71.42857143 |
| Rv1982A | Virulence, detoxification, adaptation | 75 |
| Rv2863 | Virulence, detoxification, adaptation | 80 |
| Rv0300 | Virulence, detoxification, adaptation | 100 |
| Rv0550c | Virulence, detoxification, adaptation | 100 |
| Rv1103c | Virulence, detoxification, adaptation | 100 |
| Rv2760c | Virulence, detoxification, adaptation | 100 |
| Rv0737 | Regulatory proteins | 60 |
| Rv3557c | Regulatory proteins | 60 |
| Rv3050c | Regulatory proteins | 62.5 |
| Rv1994c | Regulatory proteins | 66.66666667 |
| Rv0348 | Regulatory proteins | 71.42857143 |
| Rv2021c | Regulatory proteins | 100 |
| Rv3653 | PE/PPE | 60 |
| Rv0872c | PE/PPE | 61.11111111 |
| Rv2853 | PE/PPE | 61.11111111 |
| Rv0354c | PE/PPE | 62.5 |
| Rv2162c | PE/PPE | 62.5 |
| Rv1068c | PE/PPE | 63.63636364 |
| Rv3512 | PE/PPE | 64.28571429 |
| Rv0833 | PE/PPE | 64.70588235 |
| Rv1441c | PE/PPE | 64.70588235 |
| Rv3367 | PE/PPE | 64.70588235 |
| Rv1452c | PE/PPE | 65.2173913 |
| Rv1169c | PE/PPE | 66.66666667 |
| Rv1840c | PE/PPE | 66.66666667 |
| Rv0578c | PE/PPE | 68.29268293 |
| Rv0747 | PE/PPE | 68.42105263 |
| Rv1468c | PE/PPE | 80 |
| Rv3508 | PE/PPE | 85.18518519 |
| Rv3514 | PE/PPE | 90.32258065 |
| Rv0470c | Lipid metabolism | 60 |
| Rv0972c | Lipid metabolism | 60 |
| Rv2724c | Lipid metabolism | 60 |
| Rv2982c | Lipid metabolism | 60 |
| Rv3221c | Lipid metabolism | 100 |
| Rv0771 | Intermediary metabolism and respiration | 60 |
| Rv1851 | Intermediary metabolism and respiration | 60 |
| Rv1826 | Intermediary metabolism and respiration | 60 |
| Rv2499c | Intermediary metabolism and respiration | 60 |
| Rv2511 | Intermediary metabolism and respiration | 60 |
| Rv2250A | Intermediary metabolism and respiration | 63.63636364 |
| Rv1692 | Intermediary metabolism and respiration | 64.70588235 |
| Rv1311 | Intermediary metabolism and respiration | 66.66666667 |
| Rv1555 | Intermediary metabolism and respiration | 66.66666667 |
| Rv1990A | Intermediary metabolism and respiration | 66.66666667 |
| Rv2539c | Intermediary metabolism and respiration | 66.66666667 |
| Rv3145 | Intermediary metabolism and respiration | 66.66666667 |
| Rv2421c | Intermediary metabolism and respiration | 70 |
| Rv3624c | Intermediary metabolism and respiration | 70 |
| Rv2754c | Intermediary metabolism and respiration | 71.42857143 |
| Rv0558 | Intermediary metabolism and respiration | 72.72727273 |
| Rv0814c | Intermediary metabolism and respiration | 75 |
| Rv1305 | Intermediary metabolism and respiration | 75 |
| Rv3118 | Intermediary metabolism and respiration | 75 |
| Rv3154 | Intermediary metabolism and respiration | 77.77777778 |
| Rv2537c | Intermediary metabolism and respiration | 80 |
| Rv0137c | Intermediary metabolism and respiration | 81.81818182 |
| Rv0763c | Intermediary metabolism and respiration | 83.33333333 |
| Rv0741 | Insertion sequences and phages | 60 |
| Rv1586c | Insertion sequences and phages | 60 |
| Rv2014 | Insertion sequences and phages | 71.42857143 |
| Rv3638 | Insertion sequences and phages | 71.42857143 |
| Rv1702c | Insertion sequences and phages | 74.19354839 |
| Rv1584c | Insertion sequences and phages | 75 |
| Rv0094c | Insertion sequences and phages | 77.27272727 |
| Rv3467 | Insertion sequences and phages | 77.27272727 |
| Rv1765A | Insertion sequences and phages | 100 |
| Rv1316c | Information pathways | 60 |
| Rv2069 | Information pathways | 60 |
| Rv2906c | Information pathways | 60 |
| Rv2058c | Information pathways | 66.66666667 |
| Rv2056c | Information pathways | 66.66666667 |
| Rv1643 | Information pathways | 66.66666667 |
| Rv0722 | Information pathways | 100 |
| Rv2441c | Information pathways | 100 |
| Rv3053c | Information pathways | 100 |
| Rv3462c | Information pathways | 100 |
| Rv1772 | Conserved hypotheticals | 60 |
| Rv0678 | Conserved hypotheticals | 60 |
| Rv0607 | Conserved hypotheticals | 60 |
| Rv3678A | Conserved hypotheticals | 60 |
| Rv1590 | Conserved hypotheticals | 60 |
| Rv2283 | Conserved hypotheticals | 60 |
| Rv2426c | Conserved hypotheticals | 60 |
| Rv2438A | Conserved hypotheticals | 60 |
| Rv2558 | Conserved hypotheticals | 60 |
| Rv3224B | Conserved hypotheticals | 60 |
| Rv0323c | Conserved hypotheticals | 63.63636364 |
| Rv2257c | Conserved hypotheticals | 64.70588235 |
| Rv0078B | Conserved hypotheticals | 66.66666667 |
| Rv0181c | Conserved hypotheticals | 66.66666667 |
| Rv0530A | Conserved hypotheticals | 66.66666667 |
| Rv1120c | Conserved hypotheticals | 66.66666667 |
| Rv2820c | Conserved hypotheticals | 66.66666667 |
| Rv2239c | Conserved hypotheticals | 66.66666667 |
| Rv2342 | Conserved hypotheticals | 66.66666667 |
| Rv2923c | Conserved hypotheticals | 66.66666667 |
| Rv3472 | Conserved hypotheticals | 66.66666667 |
| Rv3033 | Conserved hypotheticals | 71.42857143 |
| Rv0028 | Conserved hypotheticals | 75 |
| Rv1890c | Conserved hypotheticals | 75 |
| Rv2603c | Conserved hypotheticals | 75 |
| Rv1066 | Conserved hypotheticals | 80 |
| Rv2049c | Conserved hypotheticals | 100 |
| Rv0378 | Conserved hypotheticals | 100 |
| Rv1893 | Conserved hypotheticals | 100 |
| Rv1993c | Conserved hypotheticals | 100 |
| Rv2548A | Conserved hypotheticals | 100 |
| Rv2738c | Conserved hypotheticals | 100 |
| Rv3440c | Conserved hypotheticals | 100 |
| Rv0011c | Cell wall and cell processes | 60 |
| Rv0431 | Cell wall and cell processes | 60 |
| Rv1463 | Cell wall and cell processes | 60 |
| Rv1973 | Cell wall and cell processes | 60 |
| Rv2856 | Cell wall and cell processes | 60 |
| Rv2936 | Cell wall and cell processes | 61.53846154 |
| Rv3864 | Cell wall and cell processes | 61.9047619 |
| Rv3312A | Cell wall and cell processes | 62.5 |
| Rv0583c | Cell wall and cell processes | 65 |
| Rv2732c | Cell wall and cell processes | 66.66666667 |
| Rv3277 | Cell wall and cell processes | 66.66666667 |
| Rv0476 | Cell wall and cell processes | 75 |
| Rv1881c | Cell wall and cell processes | 75 |
| Rv2301 | Cell wall and cell processes | 75 |
| Rv3271c | Cell wall and cell processes | 75 |
| Rv0900 | Cell wall and cell processes | 100 |
| Rv0039c | Cell wall and cell processes | 100 |
| Rv0288 | Cell wall and cell processes | 100 |
| Rv2520c | Cell wall and cell processes | 100 |
| Rv3789 | Cell wall and cell processes | 100 |
| Rv3857c | Cell wall and cell processes | 100 |