Table 2:
Top 10 enriched QTLs for the combined analysis performed with the candidate regions from the 2 studies, Feugang et al. [15] and Buzanskas et al. [14], used in the example dataset
| QTL | CHR | No. QTLs | No. QTLs db | Total No. QTLs | Total No. QTLs db | P-value | FDR | QTL type |
|---|---|---|---|---|---|---|---|---|
| Scrotal circumference | 5 | 132 | 134 | 347 | 5,942 | 1.56E−171 | 4.98E−169 | Reproduction |
| Scrotal circumference | 18 | 11 | 13 | 41 | 2,147 | 2.20E−18 | 3.52E−16 | Reproduction |
| Scrotal circumference | 9 | 11 | 14 | 30 | 1,395 | 2.04E−17 | 2.18E−15 | Reproduction |
| Milk glycosylated κ-casein percentage | 6 | 71 | 1,607 | 204 | 12,158 | 1.86E−15 | 1.49E−13 | Milk |
| Inhibin level | 5 | 47 | 285 | 347 | 5,942 | 3.38E−11 | 2.16E−09 | Reproduction |
| Scrotal circumference | 21 | 4 | 5 | 12 | 3,606 | 3.51E−10 | 1.87E−08 | Reproduction |
| Milk κ-casein percentage | 6 | 76 | 2,637 | 204 | 12,158 | 2.39E−07 | 1.01E−05 | Milk |
| Triglyceride level | 5 | 6 | 7 | 347 | 5,942 | 2.53E−07 | 1.01E−05 | Health |
| Milk glycosylated κ-casein percentage | 16 | 7 | 44 | 21 | 1,440 | 1.29E−06 | 4.58E−05 | Milk |
| Milk iron content | 23 | 4 | 8 | 19 | 1,159 | 3.48E−06 | 0.000111329 | Milk |