Skip to main content
. 2020 Dec 17;11:564939. doi: 10.3389/fgene.2020.564939

TABLE 4.

Comparison of genes involved in plant growth promotion in strains ZF129 and ZF197 as well as strains HY96-2, SQR-21, SC2, and J (sequence similarity is expressed as a percentage of the amino acid identity).

Trait Gene name ZF129
 ZF197
 HY96-2
 SQR-21
 SC2
 J
Protein id Protein id Identity (%) Protein id Identity (%) Locus tag Identity (%) Locus tag Identity (%) Locus tag Identity (%)
Indole-3-acetic production trpC WP_126666180.1 WP_149033441.1 94.32 WP_016822202.1 98.48 WP_025365128.1 98.11 WP_013371667.1 95.45 WP_069289827.1 94.70
trpS WP_102998166.1 WP_149034229.1 96.66 WP_016819987.1 99.70 WP_025365775.1 99.39 WP_013372932.1 97.87 WP_061829859.1 98.48
mtrB WP_013371682.1 WP_063213495.1 98.68 WP_025365133.1 97.37 WP_025365133.1 97.37 WP_013371682.1 100 WP_013310730.1 97.37
trpE WP_016822204.1 WP_149033443.1 98.64 WP_016822204.1 100.00 WP_016822204.1 100.00 WP_013371669.1 99.81 WP_061829209.1 97.67
trpD WP_126666179.1 WP_149033442.1 97.70 WP_016822203.1 99.71 WP_025365129.1 99.43 WP_013371668.1 98.28 WP_069289828.1 97.41
trpB WP_031461664.1 WP_063213478.1 98.49 WP_031461664.1 100.00 WP_016822200.1 99.75 WP_013371665.1 99.25 WP_069289825.1 98.24
Phosphate solubilization phoA WP_126666660.1 WP_149035852.1 93.43 WP_045244009.1 99.08 WP_025364355.1 98.62 WP_013370018.1 97.94 WP_069289795.1 38.37
phnE WP_016820374.1 WP_149034369.1 39.35 WP_017425566.1 38.39 WP_019688655.1 38.89 WP_016324733.1 39.35 WP_028541790.1 39.35
phnC WP_113051032.1 WP_149034368.1 98.05 WP_023990372.1 99.61 WP_023990372.1 99.61 WP_025674722.1 99.22 WP_039273947.1 99.22
pstB WP_016819624.1 WP_149036033.1 98.21 WP_016819624.1 100.00 WP_016819624.1 100.00 WP_013370344.1 99.64 WP_061828683.1 98.57
pstA WP_126666903.1 WP_149036234.1 98.66 WP_016819623.1 99.66 WP_016819623.1 99.66 WP_013309592.1 99.33 WP_023987910.1 99.33
pstC WP_013370343.1 WP_063213116.1 99.03 WP_013370343.1 100.00 WP_013370343.1 100.00 WP_013370343.1 100.00 WP_013370343.1 100.00
Organic acid biosynthesis gndA WP_013371891.1 WP_063213661.1 99.79 WP_013371891.1 100.00 WP_013371891.1 100.00 WP_013371891.1 100.00% WP_013310934.1 99.6
gnd WP_102997927.1 WP_149032847.1 98.99 WP_025364697.1 99.33 WP_025364697.1 99.33 WP_013370842.1 99.33 WP_053325295.1 98.32
gntK WP_019685952.1 WP_149034824.1 64.50 WP_019685952.1 100.00 WP_025363846.1 99.42 WP_013373829.1 64.89 WP_069290720.1 64.69
eda WP_013373614.1 WP_149034664.1 99.07 WP_013373614.1 100.00 WP_013373614.1 100.00 WP_013373614.1 100.00 WP_025683172.1 98.60
ppc WP_039275207.1 WP_149034421.1 100.00 WP_045245419.1 96.13 WP_025365926.1 96.24 WP_013373240.1 96.24 WP_061832059.1 99.89
citZ WP_016819628.1 WP_149036038.1 99.19 WP_016819628.1 100.00 WP_016819628.1 100.00 WP_013370349.1 99.19 WP_069291601.1 98.11
gltB WP_126666110.1 WP_149035687.1 98.63 WP_017426451.1 99.74 WP_025364254.1 99.80 WP_013369808.1 99.28 WP_069291323.1 98.24
acnA WP_016819329.1 WP_149035411.1 98.34 WP_016819329.1 100.00 WP_016819329.1 100.00 WP_013369423.1 99.45 WP_061831538.1 98.89
icdA WP_016819629.1 WP_016819629.1 100.00 WP_016819629.1 100.00 WP_016819629.1 100.00 WP_013370350.1 99.77 WP_069291602.1 99.07
sucC WP_031463318.1 WP_149032758.1 98.70 WP_039277123.1 99.22 WP_016820942.1 99.74 WP_013370664.1 98.45 WP_061831857.1 98.19
sucD WP_013370665.1 WP_149032759.1 99.35 WP_013370665.1 100.00 WP_013370665.1 100.00 WP_013370665.1 100.00 WP_025723280.1 99.35
sdhA WP_016820039.1 WP_063209489.1 98.97 WP_016820039.1 100.00 WP_025365750.1 99.83 WP_013372871.1 99.66 WP_061830109.1 98.80
sdhB WP_019688512.1 WP_063209487.1 98.43 WP_013372870.1 99.61 WP_013372870.1 99.61 WP_013372870.1 99.61 WP_013311795.1 96.86
fumC WP_016820785.1 WP_149033219.1 99.13 WP_016820785.1 100.00 WP_025364978.1 99.57 WP_013371371.1 99.13 WP_025722755.1 97.84
mdh WP_016819630.1 WP_063213110.1 98.08 WP_016819630.1 100.00 WP_016819630.1 100.00 WP_013370351.1 97.12 WP_061828678.1 95.21
ldh WP_019685949.1 WP_063210541.1 36.33 WP_019685949.1 100.00 WP_016818814.1 99.69 WP_013369109.1 98.43 WP_029517496.1 35.37
pdhA WP_013371457.1 WP_013371457.1 100.00 WP_016821911.1 99.72 WP_013371457.1 100.00 WP_013371457.1 100.00 WP_013310511.1 98.31
poxB WP_016821074.1 WP_149032865.1 98.26 WP_045243828.1 99.48 WP_025364706.1 99.65 WP_013370864.1 98.43 WP_069291767.1 97.39
ack WP_126666189.1 NA WP_013371630.1 99.75 WP_013371630.1 99.75 WP_013371630.1 99.75 WP_013310675.1 98.24
pflA WP_013371803.1 WP_149033528.1 97.98 WP_045244440.1 99.21 WP_016822311.1 99.21 WP_013371803.1 100.00 WP_013310845.1 98.02
pflB WP_016822312.1 WP_149033529.1 99.20 WP_045244439.1 99.87 WP_016822312.1 100.00 WP_013371804.1 99.47 WP_061829055.1 97.88
Nitrogen fixation nifB NA WP_149035591.1 NA NA NA WP_069291232.1 95.05
nifH NA WP_063212489.1 NA NA NA WP_061831012.1 98.61
nifD NA WP_149035592.1 NA NA NA WP_069291233.1 97.72
nifK NA WP_149035593.1 NA NA NA WP_069291234.1 97.25
nifE NA WP_149035594.1 NA NA NA WP_069291235.1 97.35
nifN NA WP_149035595.1 NA NA NA WP_069291236.1 95.63

NA, not available. Genes were identified using annotations provided in GenBank followed by BLASTx searches of the genomes using previously characterized homologs.