Table 2.
Calculated limits of detection (LoD) and limits of quantification (LoQ) for SARS-CoV-2 routine monitoring. Concentrations are reported per L of original sample after accounting for equivalent sample volume (ESV) and recovery. The LoDs and LoQs have ranges due to the differences in ESV for each sample. Also, the LoDs and LoQs are higher for E and orf1a due to their lower ESVs.
Parameter | Sample | LoD1 | N1 LoQ1 | N2 LoQ1 | LoD2 | E LoQ2 | orf1a LoQ2 |
---|---|---|---|---|---|---|---|
qPCR Reaction | N/A | 2 | 10 | 20 | 1 | 5 | 5 |
(gc) | |||||||
Centricon3 | WW | (3.7 ± 0.5) × 103 | (1.8 ± 0.3) × 104 | (3.7 ± 0.5) × 104 | (9.2 ± 1.3) × 103 | (4.6 ± 0.7) × 104 | (4.6 ± 0.7) × 104 |
(gc/L) | |||||||
HFUF-Centricon4 | WW | (8.5 ± 3.1) × 103 | (4.2 ± 1.5) × 104 | (8.5 ± 3.1) × 104 | (2.1 ± 0.8) × 104 | (1.1 ± 0.4) × 105 | (1.1 ± 0.3) × 105 |
(gc/L) | |||||||
HFUF-Centricon4 | SW/DW | (1.4 ± 0.7) × 102 | (7.1 ± 3.4) × 102 | (1.4 ± 0.7) × 103 | N/A | N/A | N/A |
(gc/L) |
LoD = limit of detection; LoQ = limit of quantification; HFUF = hollow fiber ultrafiltration; gc = gene copy; WW = wastewater; SW = source water; DW = drinking water; 1qPCR reaction with 5 μL of cDNA template; 2qPCR reaction with 1 μL of cDNA template; 3Sample concentrations adjusted for 55% recovery; 4Sample concentrations adjusted for 2.1% recovery.