Table 1.
Genetic alterations of hematopoietic TFs predisposing to B-ALL development
Risk | Gene | Mutation type | Consequence | Tumor type | ||
---|---|---|---|---|---|---|
Low-penetrance susceptibility | CEBPE | Intronic SNP | Dysregulation | B-ALL | ||
GATA3 | Intronic SNP | Dysregulation | Ph+ | |||
IKZF1 | Intronic SNP, 3′UTR SNP | Dysregulation | B-ALL | |||
ERG | ||||||
ARID5B | Intronic SNP | Dysregulation | Hyperdiploid | |||
IKZF3 | ||||||
High-penetrance susceptibility | ETV6 | Missense | Loss of function | |||
IKZF1 | Missense | Loss of function | ||||
PAX5 | Missense | Lower transcriptional activity | ||||
High-penetrance somatic variants | ETV6 | Gene fusion | Transcriptional dysregulation | ETV6–RUNX1+ pre–B-ALL | ||
CNA and/or missense | Loss of function | |||||
TCF3 | Gene fusion | Transcriptional dysregulation | TCF3–PBX1+ pre–B-ALL | |||
ZNF384 | Gene fusion | Transcriptional dysregulation | ||||
MEF2D | Gene fusion | Transcriptional dysregulation | ||||
CEBPE | CNA and/or missense | Loss of function | ||||
GATA3 | CNA and/or missense | Loss of function | ||||
IKZF1 | CNA and/or missense | Loss of function | ||||
ERG | CNA and/or missense | Loss of function | ||||
PAX5 | Gene fusions | Loss of function | ||||
IKZF3 | CNA and/or missense | Loss of function | ||||
EBF1 | CNA and/or missense | Loss of function | ||||
BTG1 | CNA and/or missense | Loss of function |
Abbreviations: CNA, copy-number alteration; Ph, Philadelphia chromosome; UTR, unstranslated region.