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. 2020 Dec 31;10:22458. doi: 10.1038/s41598-020-80444-5

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© The Author(s) 2020

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

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Identified ARGs excluding nudged findings. The coverage and identity of detected open reading frames (ORFs) by antimicrobial resistance genes (ARGs). The ORF covered proportion of the reference ARG sequence and the identity % of predicted protein (colour). The gene names which are too long have been abbreviated (w1: Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin; w2: Escherichia coli EF-Tu mutants conferring resistance to Pulvomycin; w3: E. coli marR mutant conferring antibiotic resistance; w4: E. coli soxS with mutation conferring antibiotic resistance; w5: E. coli UhpT with mutation conferring resistance to fosfomycin).