Table 1.
The list of analyzed samples obtained from NCBI SRA.
| Sample ID | BioProject | Run | Type | Source | Sample |
|---|---|---|---|---|---|
| k_g_01 | PRJEB15432 | ERR1653138 | kefir | Grain | Fr1 grain |
| k_g_02 | PRJEB15432 | ERR1653139 | kefir | Grain | Ick grain |
| k_g_03 | PRJEB15432 | ERR1653140 | kefir | Grain | UK3 grain |
| k_g_04 | PRJNA644779 | SRR12171332 | kefir | Grain | kefir seed culture |
| k_p_01 | PRJEB15432 | ERR1653129 | kefir | Product | UK3, 8 h |
| k_p_02 | PRJEB15432 | ERR1653130 | kefir | Product | Fr1, 24 h (replicate 2) |
| k_p_03 | PRJEB15432 | ERR1653131 | kefir | Product | Ick, 24 h (replicate 2) |
| k_p_04 | PRJEB15432 | ERR1653132 | kefir | Product | UK3, 24 h (replicate 2) |
| k_p_05 | PRJEB15432 | ERR1653135 | kefir | Product | Fr1, 24 h (replicate 3) |
| k_p_06 | PRJEB15432 | ERR1653136 | kefir | Product | Ick, 24 h (replicate 3) |
| k_p_07 | PRJEB15432 | ERR1653137 | kefir | Product | UK3, 24 h (replicate 3) |
| k_p_08 | PRJEB15432 | ERR1653141 | kefir | Product | Fr1, 24 h (replicate 1) |
| k_p_09 | PRJEB15432 | ERR1653142 | kefir | Product | Ick, 24 h (replicate 1) |
| k_p_10 | PRJEB15432 | ERR1653143 | kefir | Product | UK3, 24 h (replicate 1) |
| k_p_11 | PRJEB15432 | ERR1653145 | kefir | Product | Fr1, 8 h |
| k_p_12 | PRJEB15432 | ERR1653146 | kefir | Product | Ick, 8 h |
| k_p_13 | PRJNA288044 | SRR2082409 | kefir | Product | KEFIR.shotgun |
| k_p_14 | PRJNA388572 | SRR7287342 | kefir | Product | Metagenome from probiotic beverage K03 |
| k_p_15 | PRJNA388572 | SRR8282406 | kefir | Product | Metagenome from probiotic beverage K02 |
| k_s_01 | PRJDB4955 | DRR064132 | kefir | Strain | Lactobacillus parakefiri JCM 8573 |
| k_s_02 | PRJNA222257 | SRR1151211 | kefir | Strain | Lactobacillus kefiranofaciens subsp. kefiranofaciens DSM 5016 |
| k_s_03 | PRJNA222257 | SRR1151212 | kefir | Strain | Lactobacillus kefiranofaciens subsp. kefirgranum DSM 10550 |
| k_s_04 | PRJNA222257 | SRR1151213 | kefir | Strain | Lactobacillus kefiri DSM 20587 |
| k_s_05 | PRJNA222257 | SRR1151226 | kefir | Strain | Lactobacillus parakefiri DSM 10551 |
| k_s_06 | PRJNA635855 | SRR11965732 | kefir | Strain | Acetobacter syzygii str. K03D05 |
| k_s_07 | PRJNA635872 | SRR11966381 | kefir | Strain | Lactobacillus plantarum K03D08 |
| m_01 | PRJEB15432 | ERR1653133 | milk | Milk | 0 h (replicate 1) |
| m_02 | PRJEB15432 | ERR1653134 | milk | Milk | 0 h (replicate 2) |
| m_03 | PRJEB15432 | ERR1653144 | milk | Milk | 0 h (replicate 3) |
| y_g_01 | PRJNA644779 | SRR12171305 | yoghurt | Grain | yoghurt seed culture |
| y_p_01 | PRJEB30083 | ERR2982980 | yoghurt | Product | Yoghurt-A |
| y_p_02 | PRJEB30083 | ERR2982981 | yoghurt | Product | Yoghurt-B |
| y_p_03 | PRJEB30083 | ERR2982982 | yoghurt | Product | Yoghurt-C |
| y_p_04 | PRJEB30083 | ERR2982983 | yoghurt | Product | Yoghurt-D |
| y_p_05 | PRJEB30083 | ERR2982984 | yoghurt | Product | Yoghurt-E |
In the unified names of the samples the first character corresponds to the type of the sample (k and y, kefir and yoghurt, respectively), the second character comes from the first letter of the source (g, p and s for grain, product and strain, respectively), while the last tag is a sequence number. The last column shows the available attribute data of the biosamples.