Table 1.
Data content of LincSNP 3.0 and comparison of the current and previous versions
| Features | LincSNP 2.0 | LincSNP 3.0 | Fold increase |
|---|---|---|---|
| Functional variant | |||
| SNP | 809 451 | 1 489 332 | 1.84 |
| LD SNP | ∼1 160 000 | 4 315 056 | ∼3.72 |
| Somatic mutation | – | 2 492 320 | New |
| RNA editing site | – | 3 881 664 | New |
| Regulatory element | |||
| TFBS for lncRNA/circRNA | 593 492/– | 222 740 257/108 488 967 | 375.30/New |
| Enhancer for lncRNA/circRNA | –/– | 209 968/173 438 | New/New |
| DHS for lncRNA/circRNA | –/– | 5 560 190/2 868 132 | New/New |
| Footprint for lncRNA/circRNA | –/– | 9 084 051/3 258 258 | New/New |
| TAD for lncRNA/circRNA | –/– | 10 223 498/5 617 695 | New/New |
| Open chromatin region for lncRNA/circRNA | –/ – | 1 806 843/882 305 | New/New |
| Meth-QTL for lncRNA/circRNA | –/ – | 974 853/408 967 | New/New |
| RNA | |||
| LncRNA | 244 545 | 287 313 | 1.17 |
| CircRNA | – | 173 207 | New |