Figure 3.

Contents of mMGE and comparisons with public databases. (A) The completeness and quality of phage contigs estimated by CheckV for mMGE, IMG/VR and GVD, where high denotes high quality and the same for medium and low; (B) and (C) The venn diagram of plasmids and phages from different sources, where all contigs were dereplicated at population level and decontaminated with CheckV and only phage populations from human samples were considered; (D–F) The percentage of mapped reads for phages or plasmids from HMP dataset (D and E) and Virome dataset (F), where the HMP dataset includes 20 samples from PRJNA48479 and the Virome dataset contains viral enriched samples that came from PRJNA588313.