Table 2.
New track and assembly public hubs listed by UCSC, 2019–2020
| Track hub name | Provider | Assemblies |
|---|---|---|
| Splice Site Usage Values | Fairbrother lab: Brown University | hg19 |
| Colocalized segments | Chen Wang & Iuliana Ionita-Laza: Kiryluk Lab, Columbia University | hg19 |
| GENCODE COVID-19 relevant human genes | GENCODE group, European Bioinformatics Institute | hg38 |
| NCBI dbVar | dbVar Team, NCBI | hg19, hg38 |
| UCSC Repeat Browser | Jason Fernandes, Haussler Lab: University of California Santa Cruz | hg19, hg38 |
| Cotney Lab Human Embryonic Heart Hub | Justin L. Cotney: University of Connecticut Health | hg19, hg38 |
| Synonymous Constraint | Irwin Jungreis & Maxim Wolf: Broad Institute, MIT | hg19, hg38 |
| Combined Annotation Dependent Depletion (CADD) | CADD team: University of Washington, Hudson-Alpha Institute, Berlin Institute of Health | hg19, hg38 |
| refTSS | Takeya Kasukawa: RIKEN Center for Integrative Medical Science | hg38, mm10 |
| TOBIAS footprint prediction | Philipp Goymann: Max Planck Institute for Heart and Lung Research | hg38,mm10 |
| ReMap 2020 Regulatory Atlas | Benoît Ballester: ReMap human atlas | hg38, araTha1 |
| Very Short Tandem Repeats (Polytracts) | Hui Yu: Guo Lab, University of New Mexico | hg38, mm10, rn6, dm6 |
| DANIO-CODE Track Hub | Matthias Hörtenhuber: DANIO-CODE Data Coordination Center | danRer10, danRer11 |
| Wasp spider hub | Katharina J. Hoff: University of Greifswald, Germany | A. bruennichi |
| Xiphophorus maculatus assembly hub | Xiphophorus Genetic Stock Center: Texas State University | X. maculatus |
| Human Global Reference Genome assembly hub | UCSC Genome Browser: Data from PanGenome Project | 10 global human reference genomes |
| Vertebrate Genomes Project (VGP) | The Vertebrate Genomes Project | 24 vertebrates |
| NCBI RefSeq assembly hubs | UCSC Genome Browser: Data from NCBI RefSeq | 294 vertebrate assemblies |