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. 2020 Dec 21;11:612936. doi: 10.3389/fmicb.2020.612936

Table 1.

Initial BLASTn and final identifications of origins of random PCR products.

Random PCR product, Acc. No. Size (nt) Initial identification Query coverage, isolate Query % identity, Acc. No. Final NGS sequence identification % identity to NGS sequence
RdRp-a
MW226001
1,026 ButMV 99%a
ButMV-J
76.27
NC_013527
ButMV-B 99.81
RdRp-b
MW226002
950 GLV 97% (DSM)b 73.43c
KJ415259
HelVS-V 99.58
RdRp-c
MW226003
585 ButMV 99%
ButMV-J
79.79 NC_013527 ButMV-A 99.49
RdRp-d
MW226004
439 GLVd 65% (DSM) 76.21
KJ415259
HelVS-V 99.54
CP-a
MW225999
1,385 ButMV 99%
ButMV-J
79.23
NC_013527
ButMV-A 99.71
CP-b
MW226000
775 ButMV 99%
ButMV-J
81.63
NC_013527
ButMV-B 99.87
a

Pairwise alignment of RdRp-a and RdRp-c revealed 74.40% identity over the full length of RdRp-c.

b

Deutsche Sammlung von Mikroorganismen (DSM) Gaillardia latent virus isolate 5/18-05-2010.

c

Separate pairwise alignment with the ButMV-J sequence AB517596 revealed only 59% coverage at 71.01% identity. Pairwise BLASTn of RdRp-b against the partial RdRp sequence of the Impatiens isolate of HelVS revealed an overlap of the 3′-terminal 177 nt of RdRp-b with the 5′ FJ555524 at 92.39% identity.

d

A pairwise BLASTn revealed no significant similarity to ButMV-J, but comparing RdRp-b and RdRP-d revealed a direct overlap (100% identity) of the 3′-terminal 86 nt of RdRp-d with the 5′-terminal region of RdRp-b, supporting their origin from the same source.