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Phylum-level diversity changes between subject status
(A and B) DADA2-analyzed data were aligned to the SILVA database for taxonomical assignment via QIIME2 as described in Methods. Data from both sequencing runs were collapsed to phylum-level taxa and displayed for (A) strict filtered and (B) minimally filtered conditions. Asterisks on the top indicate run-run sample pairs that were positive for A. baumanii.
