Table 1.
Peptide sequences derived from isoforms detected by proteome analysis
| Detected peptide | Peptide-detected cell lines (proteome analysis) | Isoform-detected cell lines (MinION) | Gene symbol | Type | GENCODE |
|---|---|---|---|---|---|
| NLPSNPLEFNPDVLK | H1650, II-18, RERF-LC-KJ | A427, ABC-1, H1437, H1648, H1650, H1819, H2126, H2228, H2347, II-18, PC-9, RERF-LC-KJ, VMRC-LCD | ESYT2 | Unannotated exon | ENST00000275418 |
| NLPSNPLEFNPDVLKK | H1650, II-18, PC-9 | A427, ABC-1, H1437, H1648, H1650, H1819, H2126, H2228, H2347, II-18, PC-9, RERF-LC-KJ, VMRC-LCD | ESYT2 | Unannotated exon | ENST00000275418 |
| TLGEIDAQHIQGVQETATDPR | H1650 | H1650, H2228, H2347, II-18, RERF-LC-OK | FAM126A | Unannotated exon | ENST00000409923 |
| DRLEEGCLK | RERF-LC-Ad1 | H1437, H2126, II-18, RERF-LC-Ad1 | KRT7 | Alternative 5′ splice site | novel |
| EVPMVVVPPVGAK | A549, H2228 | A549, H1437, H1819, H2228, H322 | RRBP1 | Alternative last exon | ENST00000398782 |
| HLDAHTAAHSQSPR | RERF-LC-Ad2 | H322, RERF-LC-Ad2 | SUN1 | Combination (shuffling, unannotated exon) | Novel |
| RHLDAHTAAHSQSPR | RERF-LC-Ad2 | H322, RERF-LC-Ad2 | SUN1 | Combination (shuffling, unannotated exon) | Novel |