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Number of strongly biased HET sites stratified by RepeatMasker class, after aligning single-end reads from SRR622457. HET sites are determined using 1000 Genomes Project calls for NA12878, the individual sequenced in SRR622457. RandFlow methods and vg reduce the number of biased sites substantially for L1, Alu, and ERV1. RandFlow-LD-26 reduces the number of biased sites most among the methods tested
