Table 2.
GO analysis of the most significant up- and downregulated DEGs (FDR < 0.05)
| Up-regulated | Down-regulated | |||||||
|---|---|---|---|---|---|---|---|---|
| Comparison | GO accession | Up-Description | Corrected p value | DEGs number | GO accession | Down-Description | Corrected p value | DEGs number |
| D1 | GO:0140098 | catalytic activity, acting on RNA | 2.76E-05 | 137 | GO:0004672 | protein kinase activity | 4.48E-38 | 492 |
| GO:0008168 | methyltransferase activity | 0.0098431 | 56 | GO:0006468 | protein phosphorylation | 6.47E-38 | 484 | |
| GO:0016741 | transferase activity, transferring one-carbon groups | 0.0098431 | 61 | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | 2.61E-33 | 511 | |
| GO:0006801 | superoxide metabolic process | 0.011936 | 10 | GO:0016301 | kinase activity | 6.61E-31 | 521 | |
| GO:0004719 | protein-L-isoaspartate (D-aspartate) O-methyltransferase activity | 0.011936 | 16 | GO:0016310 | phosphorylation | 1.33E-30 | 501 | |
| D2 | GO:0005975 | carbohydrate metabolic process | 0.031471 | 366 | GO:0008219 | cell death | 1.29E-13 | 352 |
| GO:0008144 | drug binding | 1.29E-13 | 1615 | |||||
| GO:0006915 | apoptotic process | 2.19E-13 | 336 | |||||
| GO:0012501 | programmed cell death | 2.19E-13 | 336 | |||||
| GO:0005524 | ATP binding | 2.21E-13 | 1593 | |||||
| R1 | GO:0003735 | structural constituent of ribosome | 1.80E-14 | 229 | GO:0005975 | carbohydrate metabolic process | 6.27E-08 | 209 |
| GO:0005840 | ribosome | 1.80E-14 | 229 | GO:0004194 | obsolete pepsin A activity | 1.03E-07 | 37 | |
| GO:1990904 | ribonucleoprotein complex | 6.26E-11 | 242 | GO:0044262 | cellular carbohydrate metabolic process | 8.70E-07 | 71 | |
| GO:0005198 | structural molecule activity | 4.53E-09 | 273 | GO:0016798 | hydrolase activity, acting on glycosyl bonds | 8.57E-06 | 106 | |
| GO:0006518 | peptide metabolic process | 1.34E-07 | 279 | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | 2.33E-05 | 102 | |
| R2 | GO:0003735 | structural constituent of ribosome | 9.55E-28 | 316 | GO:0008144 | drug binding | 4.30E-42 | 1102 |
| GO:0005840 | ribosome | 9.55E-28 | 316 | GO:0005524 | ATP binding | 4.30E-42 | 1092 | |
| GO:0006412 | translation | 1.79E-24 | 402 | GO:0030554 | adenyl nucleotide binding | 4.30E-42 | 1094 | |
| GO:0006518 | peptide metabolic process | 3.43E-24 | 404 | GO:0032559 | adenyl ribonucleotide binding | 4.30E-42 | 1094 | |
| GO:0043043 | peptide biosynthetic process | 3.43E-24 | 404 | GO:0006468 | protein phosphorylation | 9.13E-41 | 618 | |
| R3 | GO:0003700 | DNA-binding transcription factor activity | 2.68E-05 | 109 | GO:0003735 | structural constituent of ribosome | 2.54E-18 | 216 |
| GO:0140110 | transcription regulator activity | 0.00017175 | 109 | GO:0005840 | ribosome | 2.54E-18 | 216 | |
| GO:0016759 | cellulose synthase activity | 0.00061948 | 16 | GO:0044267 | cellular protein metabolic process | 2.38E-17 | 583 | |
| GO:0016760 | cellulose synthase (UDP-forming) activity | 0.00061948 | 16 | GO:1990904 | ribonucleoprotein complex | 8.79E-16 | 230 | |
| GO:0030243 | cellulose metabolic process | 0.00061948 | 16 | GO:0043228 | non-membrane-bounded organelle | 1.38E-13 | 260 | |