Table 3.
CAZy families enriched in B. cellulosilyticus genomes
| CAZy gene | B. cellulosilyticus abundance1 | Other Bacteroides abundance2 | p-value(FDR) | Activity |
|---|---|---|---|---|
| PL8 | 6(2) | 1(0.01) | 4.37−6 | hyaluronate lyase; chondroitin lyase; xanthan lyase; heparin lyase |
| CBM22 | 4(1.33) | 0(0) | 2.25−4 | xylan binding function with affinity for mixed β-1,3/β-1,4-glucans |
| CBM13 | 5(1.67) | 6(0.06) | 0.002 | xylan binding function(e.g. Streptomyces lividans xylanase A) |
| GH43_11 | 3(1) | 0(0) | 0.002 | β-xylosidase; α-L-arabinofuranosidase; xylanase; |
| GH79 | 3(1) | 0(0) | 0.002 | β-glucuronidase; hyaluronoglucuronidase; heparanase |
| GH8 | 3(1) | 0(0) | 0.002 | chitosanase; cellulase; endo-1,4-β-xylanase; reducing-end-xylose releasing exo-oligoxylanase |
| PL37 | 3(1) | 0(0) | 0.002 | chondroitin-sulfate endolyase; heparin-sulfate lyase; ulvan lyase |
| GH5_13 | 6(2) | 19(0.18) | 0.007 | endo-β-1,4-xylanase; xyloglucan-specific endo-β-1,4-glucanase; arabinoxylan-specific endo-β-1,4-xylanase |
| GH10 | 12(4) | 99(0.91) | 0.025 | endo-1,4-β-xylanase; endo-1,3-β-xylanase; xylan endotransglycosylase |
| GH43_7 | 2(0.67) | 0(0) | 0.031 | β-xylosidase; α-L-arabinofuranosidase; xylanase |
1Sum of genes present in all B. cellulosilyticus genomes (N = 3). The density of the gene per B. cellulosilyticus genome is shown within parenthesis.
2Sum of genes present in all Bacteroides genomes explored different than B. celulosilyticus (N = 106). The density of the gene per genome is shown within parenthesis.