Table 4.
Pfam families enriched in B. cellulosilyticus genomes
| Domain | p-value (FDR) | Associated function |
|---|---|---|
| CBM26 | 2.21−14 | Starch-binding function. |
| SprA_N | 5.53−07 | Domain found the gliding motility-related SprA proteins -secretion |
| CYTH | 0.003 | Conversion of ATP to 3ʹ,5ʹ-cyclic AMP and pyrophosphate |
| Dak1 | 0.003 | Kinase domain of the dihydroxyacetone kinase family |
| Dak2 | 0.003 | Kinase domain of the dihydroxyacetone kinase family |
| Glyco_hydro_79 | 0.003 | Glycosyl hydrolase family 79 |
| Peptidase_C25 | 0.003 | Gingipains R and K type cysteine peptidases |
| Peptidase_M6 | 0.003 | Metalloendopeptidase of antibacterial humoral factors from insects |
| PorP_SprF | 0.003 | Gliding motility, cell movement without flagella |
| RHS_repeat | 0.003 | Heparing binding |
| Thi4 | 0.003 | Putative thiamine biosynthetic enzyme |
| TraN | 0.003 | Outer membrane protein involved in the mating-pair stabilization (adhesin) |
| AAA_lid_6 | 9.74−10 | ATPase domain |
| VKOR | 4.53−11 | Vitamin K epoxide reductase recycling reduced vitamin K |
| Phage_T4_gp19 | 1.76−5 | Tube protein gp19 sequences from the T4-like viruses |
| VCBS | 1.76−5 | Role for this domain in adhesion |
| Phage_sheath_1 | 1.33−4 | Domain in a variety of phage tail sheath proteins |
| PhdYeFM_antito | 7.35−4 | Toxin-antitoxin system |
| NPCBM | 3.44−9 | N-terminus of glycosyl hydrolase family 98 |
| Cthe_2159 | 6.45−9 | Cellulose and/or acid-sugar binding proteins |
| Malt_amylase_C | 0.005 | C-terminal domain of Maltogenic amylase |
| YoeB_toxin | 0.002 | Type II toxin-antitoxin system |
| fn3 | 3.44−9 | Fibronectin domain |
| Glyco_hydro_30 | 5.80−10 | endo-β-1,4-xylanase; β-glucosidase; β-glucuronidase; β-xylosidase |
| Lyase_8 | 5.12−7 | Bacterial lyase acting on hyaluronan/chondroitin in the extracellular matrix of host tissues |
| LRR_5 | 4.77−11 | BSPA-like surface antigens from Trichomonas vaginalis |
| Fucosidase_C | 1.01−4 | Alpha-L-fucosidase C-terminal domain |
| CBM_6 | 1.22−4 | Cellulose-binding function on amorphous cellulose and β-1,4-xylan |
| Peptidase_C39 | 1.43−4 | Cleavage of the ‘double-glycine’ leader peptides from bacteriocin precursors |
| Mannosidase_ig | 0.005 | Bacteroides thetaiotaomicron beta-mannosidase, BtMan2A – Mannose foraging |
| Pectate_lyase | 4.93−6 | Polygalacturonic acid lyase |
| Glyco_hydro_10 | 4.35−8 | endo-1,4-β-xylanase; endo-1,3-β-xylanase; xylan endotransglycosylase |
| Glyco_hydro_28 | 2.99−7 | Polygalacturonase; α-L-rhamnosidase; exo-polygalacturonase; rhamnogalacturonase |
| GH43_C2 | 1.91−4 | Beta xylosidase |
| Glyco_hydro_88 | 1.60−7 | d-4,5-unsaturated β-glucuronyl hydrolase |
| UpxZ | 0.001 | Family of transcription anti-terminator antagonists |
| Peptidase_S24 | 5.90−4 | Endopeptidases involved in LexA/RecA system DNA repair |
| Fn3-like | 4.35−8 | Fibronectin type III-like structure associated with GH3 |
| AAA_14 | 8.92−5 | ATPase module in search of a basic functions |
| Glyco_hydro_3 | 1.19−7 | β-glucosidase; xylan 1,4-β-xylosidase; β-glucosylceramidase; α-L-arabinofuranosidase |
| Glyco_hydro_43 | 1.19−9 | β-xylosidase; α-L-arabinofuranosidase; xylanase |
| Bac_rhamnosid | 0.002 | GH78 – α-L-rhamnosidase; rhamnogalacturonan α-L-rhamnohydrolase |
| Y_Y_Y | 3.87−10 | Periplasmic sensor domain binding unsaturated disaccharides |
| HisKA | 1.33−15 | Histidine kinase two-component system |
| HATPase_c | 3.87−10 | ATPase domains of histidine kinase |
| Glyco_hydro_2 | 3.11−5 | β-galactosidase; β-mannosidase; β-glucuronidase; α-L-arabinofuranosidase |
| HTH_18 | 1.35−8 | Helix-turn-helix (HTH) binding DNA. |
| Response_reg | 2.17−5 | Bacterial two-component systems, DNA binding effector domain |
| Phage_int_SAM | 5.78−4 | Phage integrase, N-terminal SAM-like domain |
| FecR | 5.43−4 | FecR is involved in regulation of iron dicitrate transport |
| Arm-DNA-bind_5 | 6.22−4 | DNA-binding domain found in various tyrosine recombinases |
| Glyco_hydro_20 | 2.34−5 | β-hexosaminidase; lacto-N-biosidase; β-1,6-N-acetylglucosaminidase |
| CoA_binding_3 | 0.005 | CoA-binding domain |
| STN | 5.67−4 | Secretins of the bacterial type II/III secretory system/TonB-dependent receptor proteins |