Key resources table.
| Reagent type (species) or resource |
Designation | Source or reference |
Identifiers | Additional information |
|---|---|---|---|---|
| Biological sample (Human) | Human gingival biopsies | Periodontology department, King’s College London | ||
| Antibody | anti-COLVI (Rabbit monoclonal) | Abcam | Cat #ab182744, RRID:AB_2847919 | IHC (1:500) |
| Antibody | anti-ACTA2 (Mouse monoclonal) | Abcam | Cat #ab7817, RRID:AB_262054 | IHC (1:200) |
| antibody | anti-MCAM (Rabbit monoclonal) | Abcam | Cat #ab75769, RRID:AB_2143375 | IHC (1:100) |
| Antibody | anti-KI67 (Rabbit polyclonal) | Abcam | Cat #ab15580, RRID:AB_443209 | IHC (1:100) |
| Antibody | anti-SOX2 (Rabbit monoclonal) |
Abcam | Cat# ab92494, RRID:AB_10585428 | IHC (1:100) |
| Antibody | anti-CD79A (Rabbit monoclonal) | Abcam | Cat# ab79414, RRID:AB_2260147 |
IHC (1:100) |
| Antibody | anti-AEBP1 (Rabbit polyclonal) | Atlas Antibodies | Cat# HPA064970, RRID:AB_2685394 | IHC (1:200) |
| Commercial assay or kit | ImmPRESS Excel Staining Kit, Anti-Rabbit Ig | Vector Laboratories | Cat# MP-7601, RRID:AB_2336533 | |
| Chemical compound, drug | UltraPure BSA (50 mg/mL) | ThermoFisher Scientific | Cat# AM2618 | 0.04% |
| Commercial assay or kit | Chromium Single Cell 3’ Library and Gel Bead Kit v3 | 10X Genomics | Cat# PN-1000092 | |
| Commercial assay or kit | Chromium Single Cell B Chip Kit | 10X Genomics | Cat# PN-1000074 | |
| Commercial assay or kit | Whole Skin Dissociation Kit, human | Miltenyi Biotec | Cat# 130-101-540 | |
| Software, algorithm | CellRanger Version 4 | 10X Genomics | RRID:SCR_017344 | |
| Software, algorithm | Seurat Version 3.0 | R Bioconductor | RRID:SCR_007322
https://satijalab.org/seurat/ |
|
| Software, algorithm | Enrichr | Chen et al., 2013 | RRID:SCR_001575 | |
| Software, algorithm | CytoTRACE | R Bioconductor | https://cytotrace.stanford.edu | |
| Software, algorithm | NicheNet | GitHub | https://github.com/saeyslab/nichenetr | |
| Other | GRCh38 | CellRanger, 10X Genomics | https://support.10xgenomics.com/single-cell-gene-expression/software/downloads/latest | |
| Other | DAPI stain | Invitrogen | D1306, RRID:AB_2629482 | (1 ug/mL) |