TABLE 3.

The summary of the features associated with the genome and plasmid identified in Salmonella genomes.

Sequence name	Size (bp)	ST type	Replicon Type (s)	Antibiotic resistance genes
S304	4,937,766	ST34		blaTEM–1B, blaTEM–1B, aph(6)-Id, aph(3″)-Ib, sul2, aac(6′)-Iaa, mdf(A)
pS304-1	254,873		IncHI2 IncHI2A	aadA2, cmlA1, ant(3″)-Ia, sul3, aac(3)-IVa, aph(4)-Ia, aph(3′)-Ia, aph(6)-Id, aph(3″)-Ib, blaTEM–1B, tet(A), qnrS1, ARR-3, cmlA1, blaOXA–10, ant(3″)-Ia, dfrA14, tet(A), floR, blaCTX–M–65
pS304_2	60.870		IncI2	mcr-1.1
pS304_3	7395		ColRNAI
S441	4,944,769	ST34		tet(B), sul2, aph(3″)-Ib, aph(6)-Id, blaTEM–1B, qnrS1, blaCTX–M–55, aac(6′)-Iaa, mdf(A)
pS441	260,707		IncHI2 IncHI2A	mcr-1.1, fosA3, blaCTX–M–14, aac(3)-IVa, aph(4)-Ia, sul2, floR, aac(3)-IId, sul3, ant(3″)-Ia, cmlA1, aadA2, sul1, oqxA, oqxB
S438	4,971,941	ST34		blaTEM–1B, aph(6)-Id, aph(3″)-Ib, sul2, tet(B), aac(6′)-Iaa, floR, sul2, aph(4)-Ia, aac(3)-IVa, blaCTX–M–14, fosA3, mdf(A)
pS438	253,817		IncHI2 IncHI2A	mcr-1.1, fosA3, blaCTX–M–14, aac(3)-IVa, aph(4)-Ia, sul2, floR, sul1, aadA2, dfrA12, aph(3′)-Ia, sul3, ant(3″)-Ia, cmlA1, aadA2, oqxA, oqxB
S520	5,038,289	ST34		aac(6′)-Iaa, mdf(A), tet(B), sul2, aph(3″)-Ib, aph(6)-Id, blaTEM–1B
pS520	253,797		IncHI2 IncHI2A	mcr-1.1, fosA3, blaCTX–M–14, aac(3)-IVa, aph(4)-Ia, sul2, floR, aadA2, cmlA1, ant(3″)-Ia, sul3, aph(3′)-Ia, dfrA12, aadA2, sul1, oqxA, oqxB
S530	5,059,260	ST17	IncN IncQ1	dfrA17, aadA5, aac(6′)-Ib-cr, blaOXA–1, catB3, ARR-3, sul1, fosA3, blaCTX–M–14, aac(3)-IVa, aph(4)-Ia, sul2, floR, mcr-1.1, mph(A), sul3, tet(A), blaTEM–1B, sul2, aph(3″)-Ib, aph(6)-Id, oqxA, oqxB, mph(E), msr(E), armA, sul1, ARR-3, catB3, blaOXA–1, aac(6′)-Ib-cr, aac(6′)-Iaa, mdf(A)
S585	5,024,322	ST34		mdf(A), aac(6′)-Iaa, tet(B), aph(6)-Id, aph(3″)-Ib, sul2
pS585_1	284,303		IncHI2 IncHI2A	sul1, aadA2, dfrA12, aph(3′)-Ia, sul3, floR, sul2, aph(4)-Ia, aac(3)-IVa, aac(6′)-Ib-cr, blaOXA–1, catB3, ARR-3, qnrS2, mcr-1.1, blaCTX–M–14, oqxA, oqxB
pS585_2	6,079		ColRNAI