Key resources table.
| Reagent type (species) or resource |
Designation | Source or reference |
Identifiers | Additional information |
|---|---|---|---|---|
| Software, algorithm | GitHub | https://github.com/ | RRID:SCR_002630 | |
| Software, algorithm | LSD | Schwalb et al., 2020 |
https://cran.r-project.org/web/packages/
LSD/index.html |
|
| Software, algorithm | MAST | Finak et al., 2015; https://doi.org/10.1186/s13059-015-0844-5 | ||
| Software, algorithm | tidymodels | Kuhn and Wickham, 2020; https://www.tidymodels.org/. | https://www.tidymodels.org/ | |
| Software, algorithm | ranger | doi:10.18637/jss.v077.i01 | RRID:SCR_017344 |
https://cran.r-project.org/web/packages/ranger/index.html
Version 0.12.1 |
| Software, algorithm | R | http://www.r-project.org/ | RRID:SCR_001905 | Versions 3.6 and 4 |
| Software, algorithm |
EBI database | doi: 10.1093/nar/gkz268. | RRID:SCR_004727 | |
| Software, algorithm | Sequence Read Archive | http://www.ncbi.nlm.nih.gov/sra | RRID:SCR_004891 | |
| Software, algorithm | pheatmap | https://www.rdocumentation.org/packages/pheatmap/versions/0.2/topics/pheatmap | RRID:SCR_016418 | |
| Software, algorithm | ArrayExpress | http://www.ebi.ac.uk/arrayexpress/ | RRID:SCR_002964 | |
| Software, algorithm | Gene Expression Omnibus | https://www.ncbi.nlm.nih.gov/geo/ | RRID:SCR_005012 | |
| Software, algorithm | REViGO | doi: 10.1371/journal.pone.0021800. | RRID:SCR_005825 | |
| Software, algorithm | gridExtra | Auguie, 2017; https://CRAN.R-project.org/package=gridExtra | https://cran.r-project.org/web/packages/gridExtra/index.html | |
| Software, algorithm | cowplot | cran | RRID:SCR_018081 |
https://cran.r-project.org/web/packages/cowplot/index.html
version 1.0.0 |
| Software, algorithm | tidyverse | cran | RRID:SCR_019186 |
https://CRAN.R-project.org/package=tidyverse
version 1.3.0 |
| Software, algorithm | limma | doi: 10.1093/nar/gkv007. | RRID:SCR_010943 | Version 3.44.3 |
| Software, algorithm | Slingshot | doi: 10.1186/s12864-018-4772-0. | RRID:SCR_017012 | Version 1.6.1 |
| Software, algorithm | KEGG | doi: 10.1093/nar/gkj102. | RRID:SCR_012773 | |
| Software, algorithm | Reactome | doi: 10.1093/nar/gkv1351. | RRID:SCR_003485 | |
| Software, algorithm | Cell Ranger | https://support.10xgenomics.com/single-cell-gene-expression/software/overview/welcome | RRID:SCR_017344 | Version 2.1.1 |
| Software, algorithm | Seurat | doi:10.1016/j.cell.2019.05.031 | RRID:SCR_007322 | Version 3.1.1 |
| Software, algorithm | Flymine | doi:10.1186/gb-2007-8-7-r129 | RRID:SCR_002694 | v51 2020 December |
| Strain, strain background (Drosophila melanogaster) |
CAMOP3 | This paper | CAMOP3 | Outbred population of D. melanogaster |
| Antibody | anti-Atilla (mouse monoclonal) | doi: 10.1556/ABiol.58.2007.Suppl.8 | L1 | 1 in 100 |
| Antibody | anti-alphaPS4 (rabbit polyclonal) | doi: 10.1038/nature05650 | 1 in 200 | |
| Antibody | anti-Mys (mouse monoclonal) | Developmental Studies Hybridoma Bank | RRID:AB_528310C; Cat#:F.6G11c | 1 in 100 |
| Sequence-based reagent | PPO3_qPCR_2_Fw | This paper | qPCR primers | GATGTGGACCGGCCTAACAA |
| Sequence-based reagent | PPO3_qPCR_2_Rev | This paper | qPCR primers | GATGCCCTTAGCGTCATCCA |
| Sequence-based reagent | atilla_qPCR2_Fw | This paper | qPCR primers | ACCCACCAAATATGCTGAAACA |
| Sequence-based reagent | atilla_qPCR2_Rv | This paper | qPCR primers | TTGATGGCCGATGCACTGT |
| Sequence-based reagent | RpL32_qPCR_F-d | https://doi.org/10.1371/journal.ppat.1004728 | qPCR primers | TGCTAAGCTGTCGCACAAATGG |
| Sequence-based reagent | RpL_qPCR_R-h | https://doi.org/10.1371/journal.ppat.1004728 | qPCR primers | TGCGCTTGTTCGATCCGTAAC |
| Other | Phalloidin staining | Invitrogen | RRID:AB_2315633; Cat. #: A12381 | 1 in 2000 |
| Other | Mineral oil | Sigma-Aldrich | Cat#: M5904 |