TABLE 2.
Proteins encoded by CDS uniquely* methylated amongst the three strains of C. jejuni YH002, 81–176, and NCTC 11168.
| C. jejuni YH002 | C. jejuni 81–176 | C. jejuni NCTC11168 |
| Chromosome | ||
| TnpV | Protein of unknown function DUF262 family | ATP synthase protein I |
| Mobile element protein | Cytochrome c, putative | Conserved hypothetical protein |
| Peroxide stress regulator; Ferric uptake regulation protein; Fe2 + /Zn2 + uptake regulation proteins | Thiol:disulfide interchange protein (dsbC), putative | Drug resistance transporter, Bcr/CflA family |
| FIG01371694: hypothetical protein | Gamma-glutamyltranspeptidase | FIG001196: Membrane protein YedZ |
| tRNA-Thr-TGT | LSU ribosomal protein L21p | FIG00469472: hypothetical protein |
| FIG00470965: hypothetical protein | FIG00470268: hypothetical protein | FIG00469493: hypothetical protein |
| Family of unknown function (DUF450) family | Predicted amino-acid acetyltransferase complementing ArgA function in Arginine Biosynthesis pathway | hypothetical protein |
| First ORF in transposon ISC1904 | Small-conductance mechanosensitive channel | L-threonine 3-O-phosphate decarboxylase |
| ATP synthase protein I-like membrane protein | Putative helix-turn-helix motif protein | Nicotinate-nucleotide adenylyltransferase/Iojap protein |
| Para-aminobenzoate synthase, amidotransferase component | Peptidyl-tRNA hydrolase | Para-aminobenzoate synthase, aminase component |
| Hypothetical domain/C-terminal domain of CinA type S | Ubiquinone/menaquinone biosynthesis methyltransferaseUbiE @ 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Putative type IIS restriction/modification enzyme, C-terminal half |
| Putative Dihydrolipoamide dehydrogenase; Mercuric ion reductase; PF00070 family, FAD-dependent NAD(P)-disulphideoxidoreductase | LSU ribosomal protein L32p | − |
| FIG00471123: hypothetical protein | 6,7-dimethyl-8-ribityllumazine synthase | − |
| tRNA-Phe-GAA | FIG00469601: hypothetical protein | − |
| FIG00471396: hypothetical protein | FIG00388607: hypothetical protein | − |
| tRNA-Ser-TGA | FIG00469384: hypothetical protein | − |
| CJIE in chromosome: | tRNA-Gly-TCC | − |
| FIG00469806: hypothetical protein | LSU ribosomal protein L33p | − |
| Death on curing protein, Doc toxin | UbiD family decarboxylase associated with menaquinone via futalosine | − |
| Thymidine kinase | FIG00470496: hypothetical protein | − |
| FIG00470782: hypothetical protein | FIG00470712: hypothetical protein | − |
| Phage antirepressor protein | FIG00471113: hypothetical protein | − |
| TraD, putative | FIG00472079: hypothetical protein | − |
| HD domain protein | FIG00469622: hypothetical protein | − |
| M protein, putative | FIG00470120: hypothetical protein | − |
| pilT protein, putative | FIG00469655: hypothetical protein | − |
| Hypothetical phage protein, putative | FIG00470478: hypothetical protein | − |
| FIG00470684: hypothetical protein | FIG00469686: hypothetical protein | − |
| IncF plasmid conjugative transfer pilus assembly protein TraF | tRNA-Gly-GCC | − |
| IncF plasmid conjugative transfer pilus assembly protein TraW | 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein | − |
| IncF plasmid conjugative transfer pilus assembly protein TraU | FIG00469538: hypothetical protein | − |
| Transcriptional regulator, XRE family | LSU ribosomal protein L34p | − |
| IncF plasmid conjugative transfer surface exclusion protein TraT | Beta-1,4-N-acetylgalactosaminyltransferase | − |
| Thioredoxin, putative | Beta-1,4-galactosyltransferase | − |
| FIG00471674: hypothetical protein | ATP synthase F0 sector subunit a | − |
| Domain of unknown function (DUF332) superfamily | N-Acetyl-neuraminatecytidylyl transferase | − |
| FIG00471014: hypothetical protein | Peptidyl-prolylcis-trans isomerase | − |
| IncF plasmid conjugative transfer pilus assembly protein TraH | Menaquinone via 6-amino-6-deoxyfutalosine step 1 | − |
| IncF plasmid conjugative transfer pilus assembly protein TraC | Protein containing aminopeptidase domain | − |
| Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) | Formyltransferase domain protein | − |
| FIG00470688: hypothetical protein | MGC82361 protein | − |
| Conjugative transfer protein TraV | tRNA-Ser-GCT | − |
| Thiol:disulfide involved in conjugative transfer | Flagellar biosynthesis protein FliL | − |
| IncF plasmid conjugative transfer pilus assembly protein TraB | GDP-mannose 4,6-dehydratase | − |
| IncF plasmid conjugative transfer pilus assembly protein TraK | LSU ribosomal protein L13p (L13Ae) | − |
| IncF plasmid conjugative transfer pilus assembly protein TraE | FIG00626672: hypothetical protein | − |
| IncF plasmid conjugative transfer pilus assembly protein | ATP/GTP-binding protein | − |
| FIG00471953: hypothetical protein | Anaerobic dimethyl sulfoxide reductase chain A | − |
| F-box DNA helicase 1 | Anaerobic dimethyl sulfoxide reductase chain B | − |
| Phage/CJIE1 in chromosome: | Anaerobic dimethyl sulfoxide reductase chain C | − |
| FIG00471569: hypothetical protein | Ribonuclease HI | − |
| FIG00471570: hypothetical protein | RepA protein homolog | − |
| DNA adenine methylase | tRNA-Leu-TAG | − |
| Phage virion morphogenesis protein, putative | Mll5128 protein | − |
| Phage tail length tape-measure protein | FIG00470615: hypothetical protein | − |
| Phage major tail tube protein, putative | LSU ribosomal protein L4p (L1e) | − |
| Major tail sheath protein | Lipopolysaccharide core biosynthesis protein LpsA | − |
| FIG00470503: hypothetical protein | tRNA-Ala-GGC | − |
| FIG00469719: hypothetical protein | Plasmid: | − |
| FIG00470940: hypothetical protein | FIG00471024: hypothetical protein | − |
| Tail fiber protein H, putative | DNA transformation competency | − |
| Baseplate assembly protein J, putative | Type IV secretion/competence protein (VirB9) | − |
| Baseplate assembly protein W, putative | Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily | − |
| FIG00470824: hypothetical protein | FIG00469544: hypothetical protein | − |
| Baseplate assembly protein V | FIG00469919: hypothetical protein | − |
| FIG00470123: hypothetical protein | Hypothetical protein pVir0008 | − |
| Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) | Hypothetical protein pVir0010 | − |
| FIG00470179: hypothetical protein | Hypothetical protein pVir0012 | − |
| FIG00471901: hypothetical protein | Hypothetical protein pVir0015 | − |
| Mu-like prophage I protein, putative | Hypothetical protein pVir0016 | − |
| FIG00469991: hypothetical protein | RepE replication protein, putative | − |
| FIG00472447: hypothetical protein | FIG00470162: hypothetical protein | − |
| Phage protein | FIG00472444: hypothetical protein | − |
| FIG00471796: hypothetical protein | FIG00472140: hypothetical protein | − |
| Prophage MuSo1, F protein, putative | Toxin-antitoxin protein, putative | − |
| Phage tail protein, putative | − | − |
| Putative regulator of late gene expression | − | − |
| DNA-binding protein, putative | − | − |
| Endonuclease I precursor | − | − |
| FIG00470704: hypothetical protein | − | − |
| FIG00471749: hypothetical protein | − | − |
| FIG00469659: hypothetical protein | − | − |
| Host-nuclease inhibitor protein Gam, putative | − | − |
| FIG00471516: hypothetical protein | − | − |
| FIG00470000: hypothetical protein | − | − |
| DNA transposition protein | − | − |
| Bacteriophage DNA transposition protein A, putative | − | − |
| FIG00470129: hypothetical protein | − | − |
| Phage repressor protein, putative | − | − |
| FIG00469983: hypothetical protein | − | − |
| Plasmid: | − | |
| Aminoglycoside phosphotransferase | − | − |
| FIG00472625: hypothetical protein | − | − |
| FIG00470991: hypothetical protein | − | − |
| FIG00469861: hypothetical protein | − | − |
| IncQ plasmid conjugative transfer protein TraG | − | − |
| FIG00471323: hypothetical protein | − | − |
| FIG00470038: hypothetical protein | − | − |
| FIG00469571: hypothetical protein | − | − |
| FIG00470457: hypothetical protein | − | − |
| Cag pathogenicity island protein (cag12) | − | − |
| FIG00472706: hypothetical protein | − | − |
*Unique methylation is defined as CDS methylated in only one of the three genomes.