Table 4.

Prediction accuracy of MAKER2 and BRAKER2

	A. thaliana			C. elegans			D. melanogaster
	MAKER2 with recommended protocol	MAKER2 with BRAKER2-like protocol	BRAKER2	MAKER2 with recommended protocol	MAKER2 with BRAKER2-like protocol	BRAKER2	MAKER2 with recommended protocol	MAKER2 with BRAKER2-like protocol	BRAKER2
Gene Sn	49.3	53.9	70.6	25.5	30.4	43.7	42.6	48.0	60.0
Gene Sp	42.1	55.6	65.8	22.1	38.9	51.3	31.1	50.3	59.5
Gene F1	45.4	54.7	68.1	23.7	34.1	47.2	35.9	49.2	59.7
Exon Sn	73.5	74.7	80.6	61.7	62.6	71.9	62.9	63.7	71.3
Exon Sp	72.6	83.0	85.8	64.5	81.4	87.1	58.7	76.0	83.2
Exon F1	73.0	78.6	83.1	63.1	70.8	78.8	60.7	69.3	76.8